All Publications (2020)

2020 INBRE Publications

Research Intensive Institutions

Authors from both Research Intensive and Primarily Undergraduate institutions

Authors from both Research Intensive institutions and Community Colleges

  1. Alabdullah, H. A., Overgaard, E., Scarbrough, D., Williams, J. E., Mohammad Mousa, O., Dunn, G., Bond, L., McGuire, M. A., & Tinker, J. K. (2020). Evaluation of the Efficacy of a Cholera-Toxin-Based Staphylococcus aureus Vaccine against Bovine Intramammary Challenge. Vaccines, 9(1).
  2. Blaufuss, P. C., Bledsoe, J. W., Gaylord, T. G., Sealey, W. M., Overturf, K. E., & Powell, M. S. (2020). Selection on a plant-based diet reveals changes in oral tolerance, microbiota and growth in rainbow trout (Oncorhynchus mykiss) when fed a high soy diet. Aquaculture, 525, 735287.
  3. Blume, Z. I., Lambert, J. M., Lovel, A. G., & Mitchell, D. M. (2020). Microglia in the developing retina couple phagocytosis with the progression of apoptosis via P2RY12 signaling. Developmental Dynamics: An Official Publication of the American Association of Anatomists.
  4. Camerino, M. J., Engerbretson, I. J., Fife, P. A., Reynolds, N. B., Berria, M. H., Doyle, J. R., Clemons, M. R., Gencarella, M. D., Borghuis, B. G., & Fuerst, P. G. (2020). OFF bipolar cell density varies by subtype, eccentricity, and along the dorsal ventral axis in the mouse retina. The Journal of Comparative Neurology.
  5. Conley Natividad, G., Theodossiou, S. K., Schiele, N. R., Murdoch, G. K., Tsamis, A., Tanner, B., Potirniche, G., Mortazavi, M., Vorp, D. A., & Martin, B. A. (2020). Ex-vivo quantification of ovine pia arachnoid complex biomechanical properties under uniaxial tension. Fluids and Barriers of the CNS, 17(1), 68.
  6. Cornell, K. A., Knippel, R. J., Cortright, G. R., Fonken, M., Guerrero, C., Hall, A. R., Mitchell, K. A., Thurston, J. H., Erstad, P., Tao, A., Xu, D., & Parveen, N. (2020). Characterization of 5’-methylthioadenosine/S-adenosylhomocysteine nucleosidases from Borrelia burgdorferi: Antibiotic targets for Lyme disease. Biochimica Et Biophysica Acta. General Subjects, 1864(1), 129455.
  7. Fredericks, L. R., Lee, M. D., Roslund, C. R., Crabtree, A. M., Allen, P. B., & Rowley, P. A. (2020). The design and implementation of restraint devices for the injection of pathogenic microorganisms into Galleria mellonella. PloS One, 15(7), e0230767.
  8. Fredericks, L. R., Lee, M. D., Roslund, C. R., Shipley, M. A., & Rowley, P. A. (2020). Vaginal isolates of Candida glabrata are Uniquely Susceptible to Killer Toxins Produced by Saccharomyces Yeasts. BioRxiv, 2020.10.14.339788.
  9. Gibbons, J. M., Marno, K. M., Pike, R., Lee, W.-Y. J., Jones, C. E., Ogunkolade, B. W., Pardieu, C., Bryan, A., Fu, R. M., Warnes, G., Rowley, P. A., Sloan, R. D., & McKnight, Á. (2020). HIV-1 Accessory Protein Vpr Interacts with REAF/RPRD2 To Mitigate Its Antiviral Activity. Journal of Virology, 94(4).
  10. Giduthuri, A. T., Theodossiou, S. K., Schiele, N. R., & Srivastava, S. K. (2020). Dielectrophoresis as a tool for electrophysiological characterization of stem cells. Biophysics Reviews, 1(1), 011304.
  11. Groome, J. R., & Bayless-Edwards, L. (2020). Roles for Countercharge in the Voltage Sensor Domain of Ion Channels. Frontiers in Pharmacology, 11.
  12. Guenther, D. C., Emehiser, R. G., Inskeep, A., Karmakar, S., & Hrdlicka, P. J. (2020). Impact of non-nucleotidic bulges on recognition of mixed-sequence dsDNA by pyrene-functionalized Invader probes. Organic & Biomolecular Chemistry, 18(24), 4645–4655.
  13. Happel, A., Sealey, W. M., Myrick, C. A., & Powell, M. S. (2020). Effects of varying dietary levels of digestible protein and digestible energy on growth performance in juvenile Yellowstone Cutthroat Trout (Oncorhynchus clarkia bouvieri). Aquaculture Reports, 17, 100336.
  14. Issaka Salia, O., & Mitchell, D. M. (2020). Bioinformatic analysis and functional predictions of selected regeneration-associated transcripts expressed by zebrafish microglia. BMC Genomics, 21(1), 870.
  15. Khani, M., Fu, A. Q., Pluid, J., Gibbs, C. P., Oshinski, J. N., Xing, T., Stewart, G. R., Zeller, J. R., & Martin, B. A. (2020). Intrathecal catheter implantation decreases cerebrospinal fluid dynamics in cynomolgus monkeys. PloS One, 15(12), e0244090.
  16. Khani, M., Sass, L. R., Sharp, M. K., McCabe, A. R., Zitella Verbick, L. M., Lad, S. P., & Martin, B. A. (2020). In vitro and numerical simulation of blood removal from cerebrospinal fluid: Comparison of lumbar drain to Neurapheresis therapy. Fluids and Barriers of the CNS, 17(1), 23.
  17. Kirkham, M., Kalivas, A., Fatema, K., Luelling, S., Dubansky, B. H., Dubansky, B., Jones, K. B., & Barrott, J. J. (2020). Underlying Ossification Phenotype in a Murine Model of Metastatic Synovial Sarcoma. International Journal of Molecular Sciences, 21(7).
  18. Kochanowska-Karamyan, A. J., Araujo, H. C., Zhang, X., El-Alfy, A., Carvalho, P., Avery, M. A., Holmbo, S. D., Magolan, J., & Hamann, M. T. (2020). Isolation and Synthesis of Veranamine, an Antidepressant Lead from the Marine Sponge Verongula rigida. Journal of Natural Products, 83(4), 1092–1098.
  19. Koueik, J., Martin, B. A., & Iskandar, B. J. (2020). Research on the Pathophysiology of Chiari I-Related Symptoms and Syringomyelia, with Emphasis on Dynamic MRI Techniques. In R. S. Tubbs, M. Turgut, & W. J. Oakes (Eds.), The Chiari Malformations (pp. 167–179). Springer International Publishing.
  20. L Aubuchon-Endsley, N., E Swann-Thomsen, H., & Douthit, N. (2020). Maternal Prenatal Cortisol and Breastfeeding Predict Infant Growth. International Journal of Environmental Research and Public Health, 17(21).
  21. Lee, C., Rohr, J., Sass, A., Sater, S., Zahid, A., Macias, B., Stenger, M. B., Samuels, B. C., Martin, B. A., Oshinski, J. N., & Ethier, C. R. (2020). In vivo estimation of optic nerve sheath stiffness using noninvasive MRI measurements and finite element modeling. Journal of the Mechanical Behavior of Biomedical Materials, 110, 103924.
  22. Martin, J. E. (2020). mSphere of Influence: Intermetal Competition during Manganese Toxicity. MSphere, 5(1).
  23. Mayo, J. N., Kauer, S. D., Brumley, M. R., & Bearden, S. E. (2020). Pericytes improve locomotor recovery after spinal cord injury in male and female neonatal rats. Microcirculation (New York, N.Y.: 1994), 27(7), e12646.
  24. Nyavor, Y., Brands, C. R., May, G., Kuther, S., Nicholson, J., Tiger, K., Tesnohlidek, A., Yasuda, A., Starks, K., Litvinenko, D., Linden, D. R., Bhattarai, Y., Kashyap, P. C., Forney, L. J., & Balemba, O. B. (2020). High-fat diet-induced alterations to gut microbiota and gut-derived lipoteichoic acid contributes to the development of enteric neuropathy. Neurogastroenterology and Motility: The Official Journal of the European Gastrointestinal Motility Society, 32(7), e13838.
  25. Richardson, B. D., Sottile, S. Y., & Caspary, D. M. (2020). Mechanisms of GABAergic and cholinergic neurotransmission in auditory thalamus: Impact of aging. Hearing Research, 108003.
  26. Rohr, J. J., Sater, S., Sass, A. M., Marshall-Goebel, K., Ploutz-Snyder, R. J., Ethier, C. R., Stenger, M. B., Martin, B. A., & Macias, B. R. (2020). Quantitative magnetic resonance image assessment of the optic nerve and surrounding sheath after spaceflight. Npj Microgravity, 6(1), 1–9.
  27. Sass, L. R., Khani, M., Romm, J., Schmid Daners, M., McCain, K., Freeman, T., Carter, G. T., Weeks, D. L., Petersen, B., Aldred, J., Wingett, D., & Martin, B. A. (2020). Non-invasive MRI quantification of cerebrospinal fluid dynamics in amyotrophic lateral sclerosis patients. Fluids and Barriers of the CNS, 17(1), 4.
  28. Sheng, H., Xue, Y., Zhao, W., Hovde, C. J., & Minnich, S. A. (2020). Escherichia coli O157:H7 Curli Fimbriae Promotes Biofilm Formation, Epithelial Cell Invasion, and Persistence in Cattle. Microorganisms, 8(4).
  29. Simmons, A. B., Camerino, M. J., Clemons, M. R., Sukeena, J. M., Bloomsburg, S., Borghuis, B. G., & Fuerst, P. G. (2020). Increased density and age-related sharing of synapses at the cone to OFF bipolar cell synapse in the mouse retina. The Journal of Comparative Neurology, 528(7), 1140–1156.
  30. Stalder, T., Cornwell, B., Lacroix, J., Kohler, B., Dixon, S., Yano, H., Kerr, B., Forney, L. J., & Top, E. M. (2020). Evolving Populations in Biofilms Contain More Persistent Plasmids. Molecular Biology and Evolution, 37(6), 1563–1576.
  31. Theodossiou, S. K., Murray, J. B., & Schiele, N. R. (2020). Cell-cell junctions in developing and adult tendons. Tissue Barriers, 8(1), 1695491.
  32. Williams, M., Sater, S., Burkhalter, C., Schoonen, S., Miller, J., Shrestha, D., Brumley, M. R., & Schiele, N. R. (2020). Low-cost, open-source, variable speed and incline treadmill for studying impacts of neonatal locomotion. HardwareX, 7, e00097.
  33. Wixom, A. Q., Casavant, N. C., Sonnen, T. J., Kuhl, J. C., Xiao, F., Dandurand, L.-M., & Caplan, A. B. (2020). Initial responses of the trap-crop, Solanum sisymbriifolium, to Globodera pallida invasions. The Plant Genome, 13(2), e20016.


Primarily Undergraduate Institutions

Authors from both Research Intensive and Primarily Undergraduate institutions

  1. Alabdullah, H. A., Overgaard, E., Scarbrough, D., Williams, J. E., Mohammad Mousa, O., Dunn, G., Bond, L., McGuire, M. A., & Tinker, J. K. (2020). Evaluation of the Efficacy of a Cholera-Toxin-Based Staphylococcus aureus Vaccine against Bovine Intramammary Challenge. Vaccines, 9(1).
  2. Bas, G., Loisate, S., Hudon, S. F., Woods, K., Hayden, E. J., Pu, X., Beard, R., Oxford, J. T., & Uzer, G. (2020). Low Intensity Vibrations Augment Mesenchymal Stem Cell Proliferation and Differentiation Capacity during in vitro Expansion. Scientific Reports, 10(1), 9369.
  3. Beard, R. S., Hoettels, B. A., Meegan, J. E., Wertz, T. S., Cha, B. J., Yang, X., Oxford, J. T., Wu, M. H., & Yuan, S. Y. (2020). AKT2 maintains brain endothelial claudin-5 expression and selective activation of IR/AKT2/FOXO1-signaling reverses barrier dysfunction. Journal of Cerebral Blood Flow and Metabolism: Official Journal of the International Society of Cerebral Blood Flow and Metabolism, 40(2), 374–391.
  4. Cantrell, M. S., Seale, J. T., Arispe, S. A., & McDougal, O. M. (2020). Determination of Organosulfides from Onion Oil. Foods (Basel, Switzerland), 9(7).
  5. Chakraborti, M., Schlachter, S., Primus, S., Wagner, J., Sweet, B., Carr, Z., Cornell, K. A., & Parveen, N. (2020). Evaluation of Nucleoside Analogs as Antimicrobials Targeting Unique Enzymes in Borrelia burgdorferi. Pathogens (Basel, Switzerland), 9(9).
  6. Cornell, K. A., Benfield, K., Berntsen, T., Clingerman, J., Croteau, A., Goering, S., Moyer, D., Provost, M., White, A., Plumlee, D., Oxford, J. T., & Browning, J. (2020). A Cold Atmospheric Pressure Plasma Discharge Device Exerts Antimicrobial Effects. International Journal of Latest Trends in Engineering & Technology: IJLTET, 15(3), 036–041.
  7. Cornell, K. A., Knippel, R. J., Cortright, G. R., Fonken, M., Guerrero, C., Hall, A. R., Mitchell, K. A., Thurston, J. H., Erstad, P., Tao, A., Xu, D., & Parveen, N. (2020). Characterization of 5’-methylthioadenosine/S-adenosylhomocysteine nucleosidases from Borrelia burgdorferi: Antibiotic targets for Lyme disease. Biochimica Et Biophysica Acta. General Subjects, 1864(1), 129455.
  8. Crow, J. J., & Albig, A. R. (2020). Notch family members follow stringent requirements for intracellular domain dimerization at sequence-paired sites. PloS One, 15(11), e0234101.
  9. Curl, C. L., Spivak, M., Phinney, R., & Montrose, L. (2020). Synthetic Pesticides and Health in Vulnerable Populations: Agricultural Workers. Current Environmental Health Reports, 7(1), 13–29.
  10. Deng, Z., Rosales, B., Choi, L., Mooers, S., & Johnson, B. C. (2020). 3D-printed and wireless piezoelectric tactile sensors. 1375, 113752A.
  11. Dong, S.-H., Nhu-Lam, M., Nagarajan, R., & Nair, S. K. (2020). Structure-Guided Biochemical Analysis of Quorum Signal Synthase Specificities. ACS Chemical Biology, 15(6), 1497–1504.
  12. Doucette, M., Payne, K. M., Lough, W., Beck, A., Wayment, K., Huffman, J., Bond, L., Thomas-Vogel, A., & Langley, S. (2020). Early Advanced Therapy for Diabetic Foot Ulcers in High Amputation Risk Veterans: A Cohort Study. The International Journal of Lower Extremity Wounds, 1534734620928151.
  13. Doumas, D. M., Esp, S., Turrisi, R., Bond, L., & Flay, B. (2020). Efficacy of the eCHECKUP TO GO for High School Seniors: Sex Differences in Risk Factors, Protective Behavioral Strategies, and Alcohol Use. Journal of Studies on Alcohol and Drugs, 81(2), 135–143.
  14. Doumas, D. M., Esp, S., Turrisi, R., Bond, L., Porchia, S., & Flay, B. (2020). Sex differences in the acceptability and short-term outcomes of a web-based personalized feedback alcohol intervention for high school seniors. Psychology in the Schools, 57(11), 1724–1740.
  15. Estrada, D., Oxford, J. T., & Solov’yov, I. A. (2020, December 8). The Thinnest of Materials May Hold a Cure for Osteoarthritis • Global.
  16. Frankel-Bricker, J. (2020). Shifts in the microbiota associated with male mosquitoes (Aedes aegypti) exposed to an obligate gut fungal symbiont (Zancudomyces culisetae). Scientific Reports, 10(1), 12886.
  17. Frankel-Bricker, J., Buerki, S., Feris, K. P., & White, M. M. (2020). Influences of a Prolific Gut Fungus (Zancudomyces culisetae) on Larval and Adult Mosquito (Aedes aegypti)-Associated Microbiota. Applied and Environmental Microbiology, 86(3).
  18. Guo, X., Eitnier, R. A., Beard, R. S., Meegan, J. E., Yang, X., Aponte, A. M., Wang, F., Nelson, P. R., & Wu, M. H. (2020). Focal adhesion kinase and Src mediate microvascular hyperpermeability caused by fibrinogen- γC- terminal fragments. PloS One, 15(4), e0231739.
  19. Hardy, M. J., Reeck, J. C., Fang, M., Adams, J. S., & Oxford, J. T. (2020). Col11a1a Expression Is Required for Zebrafish Development. Journal of Developmental Biology, 8(3).
  20. Holmlund, H., Marín-Hernández, Á., & Chase, J. R. (2020). Estradiol and progesterone affect enzymes but not glucose consumption in a mink uterine cell line (GMMe). Bioscience Reports, 40(4).
  21. Kennedy, Z., Newberg, J., Goelzer, M., Judex, S., Fitzpatrick, C., & Uzer, G. (2020). Modeling stem cell nucleus mechanics using confocal microscopy. BioRxiv.
  22. Maddock, S. T., Nussbaum, R. A., Day, J. J., Latta, L., Miller, M., Fisk, D. L., Wilkinson, M., Rocha, S., Gower, D. J., & Pfrender, M. E. (2020). The roles of vicariance and isolation by distance in shaping biotic diversification across an ancient archipelago: Evidence from a Seychelles caecilian amphibian. BMC Evolutionary Biology, 20(1), 110.
  23. Mellor, L. F., Nordberg, R. C., Huebner, P., Mohiti-Asli, M., Taylor, M. A., Efird, W., Oxford, J. T., Spang, J. T., Shirwaiker, R. A., & Loboa, E. G. (2020). Investigation of multiphasic 3D-bioplotted scaffolds for site-specific chondrogenic and osteogenic differentiation of human adipose-derived stem cells for osteochondral tissue engineering applications. Journal of Biomedical Materials Research. Part B, Applied Biomaterials, 108(5), 2017–2030.
  24. Midgett, A., Doumas, D. M., Peralta, C., Bond, L., & Flay, B. (2020). Impact of a Brief, Bystander Bullying Prevention Program on Depressive Symptoms and Passive Suicidal Ideation: A Program Evaluation Model for School Personnel. Journal of Prevention and Health Promotion, 1(1), 80–103.
  25. Montrose, L., Goodrich, J. M., Morishita, M., Kochmanski, J., Klaver, Z., Cavalcante, R., Lumeng, J. C., Peterson, K. E., & Dolinoy, D. C. (2020). Neonatal Lead (Pb) Exposure and DNA Methylation Profiles in Dried Bloodspots. International Journal of Environmental Research and Public Health, 17(18).
  26. Neier, K., Montrose, L., Chen, K., Malloy, M. A., Jones, T. R., Svoboda, L. K., Harris, C., Song, P. X. K., Pennathur, S., Sartor, M. A., & Dolinoy, D. C. (2020). Short- and long-term effects of perinatal phthalate exposures on metabolic pathways in the mouse liver. Environmental Epigenetics, 6(1), dvaa017.
  27. Nelson, S. J., Creechley, J. J., Wale, M. E., & Lujan, T. J. (2020). Print-A-Punch: A 3D printed device to cut dumbbell-shaped specimens from soft tissue for tensile testing. Journal of Biomechanics, 112, 110011.
  28. Newberg, J., Schimpf, J., Woods, K., Loisate, S., Davis, P. H., & Uzer, G. (2020). Isolated nuclei stiffen in response to low intensity vibration. Journal of Biomechanics, 111, 110012.
  29. Oxford, A. E., Halla, F., Robertson, E. B., & Morrison, B. E. (2020). Endothelial Cell Contributions to COVID-19. Pathogens (Basel, Switzerland), 9(10).
  30. Oxford, J. T., Cornell, K. A., Romero, J. J., Smith, D. B., Yarnell, T. L., Wood, R. M., Jorcyk, C. L., Lujan, T. J., Albig, A. R., Mitchell, K. A., McDougal, O. M., Fologea, D., Estrada, D., Tinker, J. K., Nagarajan, R., Warner, D. L., Rohn, T. T., Browning, J., Beard, R. S., … Turner, M. W. (2020). Center of Biomedical Research Excellence in Matrix Biology: Building Research Infrastructure, Supporting Young Researchers, and Fostering Collaboration. International Journal of Molecular Sciences, 21(6).
  31. Oxford, J. T., & Jorcyk, C. L. (2020). Students engage in primary literature in molecular biology techniques using an online journal club format. Biochemistry and Molecular Biology Education: A Bimonthly Publication of the International Union of Biochemistry and Molecular Biology, 48(6), 675–677.
  32. Paleologos, E. K., O’Kelly, B. C., Tang, C.-S., Cornell, K., Rodríguez-Chueca, J., Abuel-Naga, H., Koda, E., Farid, A., Vaverková, M. D., Kostarelos, K., Goli, V. S. N. S., Guerra-Rodríguez, S., Leong, E.-C., Jayanthi, P., Shashank, B. S., Sharma, S., Shreedhar, S., Mohammad, A., Jha, B., … Singh, D. N. (2020). Post Covid-19 water and waste water management to protect public health and geoenvironment. Environmental Geotechnics, 1–15.
  33. Pandhi, T., Chandnani, A., Subbaraman, H., & Estrada, D. (2020). A Review of Inkjet Printed Graphene and Carbon Nanotubes Based Gas Sensors. Sensors (Basel, Switzerland), 20(19).
  34. Pirtle, T. J., & Satterlie, R. A. (2020). Cyclic Guanosine Monophosphate Modulates Locomotor Acceleration Induced by Nitric Oxide but not Serotonin in Clione limacina Central Pattern Generator Swim Interneurons. Integrative Organismal Biology, obaa045.
  35. Pollock, T. B., Cholico, G. N., Isho, N. F., Day, R. J., Suresh, T., Stewart, E. S., McCarthy, M. M., & Rohn, T. T. (2020). Transcriptome Analyses in BV2 Microglial Cells Following Treatment With Amino-Terminal Fragments of Apolipoprotein E. Frontiers in Aging Neuroscience, 12, 256.
  36. Radke, J. R., Covert, H. J., Bauer, F., Ananthanarayanan, V., & Cook, J. L. (2020). Adenovirus 14p1 Immunopathogenesis during Lung Infection in the Syrian Hamster. Viruses, 12(6).
  37. Rahman, A. A., Soto-Avellaneda, A., Yong Jin, H., Stojkovska, I., Lai, N. K., Albright, J. E., Webb, A. R., Oe, E., Valarde, J. P., Oxford, A. E., Urquhart, P. E., Wagner, B., Brown, C., Amado, I., Vasquez, P., Lehning, N., Grozdanov, V., Pu, X., Danzer, K. M., & Morrison, B. E. (2020). Enhanced Hyaluronan Signaling and Autophagy Dysfunction by VPS35 D620N. Neuroscience, 441, 33–45.
  38. Sankaran, J. S., Sen, B., Dudakovic, A., Paradise, C. R., Perdue, T., Xie, Z., McGrath, C., Styner, M., Newberg, J., Uzer, G., van Wijnen, A. J., & Rubin, J. (2020). Knockdown of formin mDia2 alters lamin B1 levels and increases osteogenesis in stem cells. Stem Cells (Dayton, Ohio), 38(1), 102–117.
  39. Schuller, A., & Montrose, L. (2020). Influence of Woodsmoke Exposure on Molecular Mechanisms Underlying Alzheimer’s Disease: Existing Literature and Gaps in Our Understanding. Epigenetics Insights, 13, 2516865720954873.
  40. Scott, P. S., Andrew, J. P., Bundy, B. A., Grimm, B. K., Hamann, M. A., Ketcherside, D. T., Li, J., Manangquil, M. Y., Nuñez, L. A., Pittman, D. L., Rivero-Zevallos, A., Uhlorn, R., & Johnston, N. A. C. (2020). Observations of volatile organic and sulfur compounds in ambient air and health risk assessment near a paper mill in rural Idaho, U. S. A. Atmospheric Pollution Research, 11(10), 1870–1881.
  41. Sen, B., Paradise, C. R., Xie, Z., Sankaran, J., Uzer, G., Styner, M., Meyer, M., Dudakovic, A., van Wijnen, A. J., & Rubin, J. (2020). β-Catenin Preserves the Stem State of Murine Bone Marrow Stromal Cells Through Activation of EZH2. Journal of Bone and Mineral Research: The Official Journal of the American Society for Bone and Mineral Research, 35(6), 1149–1162.
  42. Shrestha, N., Thomas, C. A., Richtsmeier, D., Bogard, A., Hermann, R., Walker, M., Abatchev, G., Brown, R. J., & Fologea, D. (2020). Temporary Membrane Permeabilization via the Pore-Forming Toxin Lysenin. Toxins, 12(5).
  43. Soto-Avellaneda, A., & Morrison, B. E. (2020a). Signaling and other functions of lipids in autophagy: A review. Lipids in Health and Disease, 19(1), 214.
  44. Soto-Avellaneda, A., & Morrison, B. E. (2020b). Central nervous system and peripheral cell labeling by vascular endothelial cadherin-driven lineage tracing in adult mice. Neural Regeneration Research, 15(10), 1856–1866.
  45. Stevens, D. L., Bryant, A. E., & Hagman, M. M. (2020). Nonpneumococcal streptococcal infections and rheumatic fever. In Goldman-Cecil Medicine. 26th ed. Philadelphia, PA: Elsevier.
  46. Tala, F., Bandali, M., & Johnson, B. C. (2020). Automated Distributed Element Model Generation for Neural Interface Co-Design. 2020 IEEE 63rd International Midwest Symposium on Circuits and Systems (MWSCAS), 917–920.
  47. Tala, Fnu, & Johnson, B. C. (2020). MEDUSA: A Low-Cost, 16-Channel Neuromodulation Platform with Arbitrary Waveform Generation. Electronics, 9(5), 812.
  48. Tanikella, A. S., Hardy, M. J., Frahs, S. M., Cormier, A. G., Gibbons, K. D., Fitzpatrick, C. K., & Oxford, J. T. (2020). Emerging Gene-Editing Modalities for Osteoarthritis. International Journal of Molecular Sciences, 21(17).
  49. Thomas, M. U., Messex, J. K., Dang, T., Abdulkadir, S. A., Jorcyk, C. L., & Liou, G.-Y. (2020). Macrophages expedite cell proliferation of prostate intraepithelial neoplasia through their downstream target ERK. The FEBS Journal.
  50. Thompson, M., Woods, K., Newberg, J., Oxford, J. T., & Uzer, G. (2020). Low-intensity vibration restores nuclear YAP levels and acute YAP nuclear shuttling in mesenchymal stem cells subjected to simulated microgravity. NPJ Microgravity, 6(1), 35.
  51. Thurston, J. H., Clifford, A. J., Henderson, B. S., Smith, T. R., Quintana, D., Cudworth, K. F., Lujan, T. J., & Cornell, K. A. (2020). Development of Photoactive g-C3N4/Poly(vinyl alcohol) Composite Hydrogel Films with Antimicrobial and Antibiofilm Activity. ACS Applied Bio Materials.
  52. Wavreil, F. D. M., & Heggland, S. J. (2020). Cinnamon-flavored electronic cigarette liquids and aerosols induce oxidative stress in human osteoblast-like MG-63 cells. Toxicology Reports, 7, 23–29.
  53. Yi, X., Wright, L. E., Pagnotti, G. M., Uzer, G., Powell, K. M., Wallace, J. M., Sankar, U., Rubin, C. T., Mohammad, K., Guise, T. A., & Thompson, W. R. (2020). Mechanical suppression of breast cancer cell invasion and paracrine signaling to osteoclasts requires nucleo-cytoskeletal connectivity. Bone Research, 8(1), 40.

Community Colleges

  Authors from both Research Intensive institutions and Community Colleges

  1. Camerino, M. J., Engerbretson, I. J., Fife, P. A., Reynolds, N. B., Berria, M. H., Doyle, J. R., Clemons, M. R., Gencarella, M. D., Borghuis, B. G., & Fuerst, P. G. (2020). OFF bipolar cell density varies by subtype, eccentricity, and along the dorsal ventral axis in the mouse retina. The Journal of Comparative Neurology.
  2. Nyavor, Y., Brands, C. R., May, G., Kuther, S., Nicholson, J., Tiger, K., Tesnohlidek, A., Yasuda, A., Starks, K., Litvinenko, D., Linden, D. R., Bhattarai, Y., Kashyap, P. C., Forney, L. J., & Balemba, O. B. (2020). High-fat diet-induced alterations to gut microbiota and gut-derived lipoteichoic acid contributes to the development of enteric neuropathy. Neurogastroenterology and Motility: The Official Journal of the European Gastrointestinal Motility Society, 32(7), e13838.
  3. Simmons, A. B., Camerino, M. J., Clemons, M. R., Sukeena, J. M., Bloomsburg, S., Borghuis, B. G., & Fuerst, P. G. (2020). Increased density and age-related sharing of synapses at the cone to OFF bipolar cell synapse in the mouse retina. The Journal of Comparative Neurology, 528(7), 1140–1156.


All Publications (2019)

2019 INBRE Publications

Research Intensive Institutions

Authors from both Research Intensive and Primarily Undergraduate institutions

Authors from both Research Intensive institutions and Community Colleges

  1. Bhushan, A., Desai, V., Lai, J., Leung, S. W., & Zhang, Y. (2019). Cytotoxic Effects of Short Multi-Wall Carbon Nanotubes on Pancreatic Cancer Cells. TechConnect Briefs, 2019, 397–400.
  2. Bhushan, A., Gao, W., Lai, J., & Leung, S. W. (2019). Enhancement of Effects of Chitosan and Nanoparticles on Pancreatic Cancer Cells by Combination Treatments with the Anti-Cancer Drug Adriamycin. TechConnect Briefs, 2019, 401–404.
  3. Blaufuss, P. C., Gaylord, T. G., Sealey, W. M., & Powell, M. S. (2019). Effects of high-soy diet on S100 gene expression in liver and intestine of rainbow trout (Oncorhynchus mykiss). Fish & Shellfish Immunology, 86, 764–771.
  4. Brown, R. M., Rana, P. S. J. B., Jaeger, H. K., O’Dowd, J. M., Balemba, O. B., & Fortunato, E. A. (2019). Human Cytomegalovirus Compromises Development of Cerebral Organoids. Journal of Virology, 93(17).
  5. Crabtree, A. M., Kizer, E. A., Hunter, S. S., Van Leuven, J. T., New, D. D., Fagnan, M. W., & Rowley, P. A. (2019). A Rapid Method for Sequencing Double-Stranded RNAs Purified from Yeasts and the Identification of a Potent K1 Killer Toxin Isolated from Saccharomyces cerevisiae. Viruses, 11(1).
  6. Culbertson, V. L., Rahman, S. E., Bosen, G. C., Caylor, M. L., & Xu, D. (2019). Use of a Bioinformatics-Based Toxicity Scoring System to Assess Serotonin Burden and Predict Population-Level Adverse Drug Events from Concomitant Serotonergic Drug Therapy. Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy, 39(2), 171–181.
  7. Damase, T. R., & Allen, P. B. (2019a). Designed and Evolved Nucleic Acid Nanotechnology: Contrast and Complementarity. Bioconjugate Chemistry, 30(1), 2–12.
  8. Damase, T. R., & Allen, P. B. (2019b). Idiosyncrasies of thermofluorimetric aptamer binding assays. Biotechniques, 66(3), 121–127.
  9. Doherty, T. S., Bozeman, A. L., Roth, T. L., & Brumley, M. R. (2019). DNA methylation and behavioral changes induced by neonatal spinal transection. Infant Behavior and Development, 57, 101381.
  10. Fredericks, L., Roslund, C., Crabtree, A., & Rowley, P. (2019). Inhibition of Drug-Resistant Candida glabrata by Killer Toxins Produced by Saccharomyces cerevisiae. Access Microbiology, 1(9), 38.
  11. Hodonu, A., Escobar, M., Beach, L., Hunt, J., & Rose, J. (2019). Glycogen metabolism in mink uterine epithelial cells and its regulation by estradiol, progesterone and insulin. Theriogenology, 130, 62–70.
  12. Hofwegen, D. J. V., Hovde, C. J., & Minnich, S. A. (2019). Comparison of Yersinia enterocolitica DNA methylation at ambient and host temperatures. BioRxiv, 2019.12.16.878991.
  13. Identifying novel antifungal proteins from ‘killer yeasts’ – an interview with Paul Rowley. (2019, September 18). Infectious Diseases Hub.
  14. Javidi, M., McGowan, C. P., Schiele, N. R., & Lin, D. C. (2019). Tendons from kangaroo rats are exceptionally strong and tough. Scientific Reports, 9(1), 8196.
  15. Kabir, H., Zhu, H., May, J., Hamal, K., Kan, Y., Williams, T., Echeverria, E., McIlroy, D. N., Estrada, D., Davis, P. H., Pandhi, T., Yocham, K., Higginbotham, K., Clearfield, A., & Cheng, I. F. (2019). The sp2-sp3 carbon hybridization content of nanocrystalline graphite from pyrolyzed vegetable oil, comparison of electrochemistry and physical properties with other carbon forms and allotropes. Carbon, 144, 831–840.
  16. Karmakar, S., Horrocks, T., Gibbons, B. C., Guenther, D. C., Emehiser, R., & Hrdlicka, P. J. (2019). Synthesis and biophysical characterization of oligonucleotides modified with O2′-alkylated RNA monomers featuring substituted pyrene moieties. Organic & Biomolecular Chemistry, 17(3), 609–621.
  17. Kaushik, G., & Thomas, M. A. (2019). The potential association of psychoactive pharmaceuticals in the environment with human neurological disorders. Sustainable Chemistry and Pharmacy, 13.
  18. Khani, M., Lawrence, B. J., Sass, L. R., Gibbs, C. P., Pluid, J. J., Oshinski, J. N., Stewart, G. R., Zeller, J. R., & Martin, B. A. (2019). Characterization of intrathecal cerebrospinal fluid geometry and dynamics in cynomolgus monkeys (macaca fascicularis) by magnetic resonance imaging. PloS One, 14(2), e0212239.
  19. Khani, M., Sass, L., McCabe, A., Zitella Verbick, L., Lad, S. P., Sharp, M. K., & Martin, B. (2019). Impact of Neurapheresis system on intrathecal cerebrospinal fluid dynamics: A computational fluid dynamics study. Journal of Biomechanical Engineering.
  20. Koueik, J., Martin, B., & Iskandar, B. (2019). Research on the Pathophysiology of Chiari I-Related Symptoms and Syringomyelia, with Emphasis on Dynamic MRI Techniques.
  21. Lewis, J., Smith, B. A., Oakes, H., Holman, R. W., & Rodnick, K. J. (2019). New Evidence for the Diversity of Mechanisms and Protonated Schiff Bases Formed in the Non-Enzymatic Covalent Protein Modification (NECPM) of HbA by the Hydrate and Aldehydic Forms of Acetaldehyde and Glyceraldehyde. Cogent Biology, 5.
  22. Luciano, M. G., Batzdorf, U., Kula, R. W., Rocque, B. G., Maher, C. O., Heiss, J., Martin, B. A., Bolognese, P. A., Ashley-Koch, A., Limbrick, D., Poppe, D. J., Esposito, K. M., Odenkirchen, J., Esterlitz, J. R., Ala’i, S., Joseph, K., Feldman, R. S., Riddle, R., & Chiari I Malformation Common Data Element Working Group. (2019). Development of Common Data Elements for Use in Chiari Malformation Type I Clinical Research: An NIH/NINDS Project. Neurosurgery, 85(6), 854–860.
  23. Mackin, R. D., Frey, R. A., Gutierrez, C., Farre, A. A., Kawamura, S., Mitchell, D. M., & Stenkamp, D. L. (2019). Endocrine regulation of multichromatic color vision. Proceedings of the National Academy of Sciences of the United States of America, 116(34), 16882–16891.
  24. Marquart, L. A., Turner, M. W., Warner, L. R., King, M. D., Groome, J. R., & McDougal, O. M. (2019). Ribbon α-Conotoxin KTM Exhibits Potent Inhibition of Nicotinic Acetylcholine Receptors. Marine Drugs, 17(12).
  25. Martin, J. E., Le, M. T., Bhattarai, N., Capdevila, D. A., Shen, J., Winkler, M. E., & Giedroc, D. P. (2019). A Mn-sensing riboswitch activates expression of a Mn2+/Ca2+ ATPase transporter in Streptococcus. Nucleic Acids Research, 47(13), 6885–6899.
  26. Marx, C. J. (2019). Experimental Evolution of Methylobacterium: 15 Years of Planned Experiments and Surprise Findings. Current Issues in Molecular Biology, 33, 249–266.
  27. McGinn, T. E., Galicia, C. A., Leoni, D. C., Partington, N., Mitchell, D. M., & Stenkamp, D. L. (2019). Rewiring the Regenerated Zebrafish Retina: Reemergence of Bipolar Neurons and Cone-Bipolar Circuitry Following an Inner Retinal Lesion. Frontiers in Cell and Developmental Biology, 7, 95.
  28. Mitchell, D. M., Sun, C., Hunter, S. S., New, D. D., & Stenkamp, D. L. (2019). Regeneration associated transcriptional signature of retinal microglia and macrophages. Scientific Reports, 9(1), 4768.
  29. Moore, J. M., Shine, C. L., McGowan, C. P., & McKinley, P. K. (2019). Exploring Bipedal Hopping through Computational Evolution. Artificial Life, 25(3), 236–249.
  30. Mottishaw, C. R., Becker, S., Smith, B., Titus, G., Holman, R. W., & Rodnick, K. J. (2019). Insights into the Progression of Labile Hb A1c to Stable Hb A1cvia a Mechanistic Assessment of 2,3-Bisphosphoglycerate Facilitation of the Slow Nonenzymatic Glycation Process. Hemoglobin, 43(1), 42–49.
  31. Nyavor, Y., Estill, R., Edwards, H., Ogden, H., Heideman, K., Starks, K., Miller, C., May, G., Flesch, L., McMillan, J., Gericke, M., Forney, L., & Balemba, O. (2019). Intestinal nerve cell injury occurs prior to insulin resistance in female mice ingesting a high-fat diet. Cell and Tissue Research, 376(3), 325–340.
  32. Pashikanti, S., Afrin, F., Meldrum, T. C., Stegelmeier, J. L., Pavek, A., Habashi, Y. A., Fatema, K., & Barrott, J. J. (2019). Quantifying Fluorescently Labeled Ceramide Levels in Human Sarcoma Cell Lines in Response to a Sphingomyelin Synthase Inhibitor. Methods and Protocols, 2(3).
  33. Pilarski, J. Q., Leiter, J. C., & Fregosi, R. F. (2019). Muscles of Breathing: Development, Function, and Patterns of Activation. Comprehensive Physiology, 9(3), 1025–1080.
  34. Şengör, S. S., Gikas, P., & Moberly, J. G. (2019). Single and joint effects of Zn and Cu to ATP pool and microbial recovery in continuous growth systems. Journal of Chemical Technology & Biotechnology, 94(3), 892–899.
  35. Society, M. (2019, June 25). Could ‘killer yeasts’ be the key to treating drug-resistant Candida glabrata?
  36. Stark, T. D., Ranner, J., Stiglbauer, B., Weiss, P., Stark, S., Balemba, O. B., & Hofmann, T. (2019). Construction and Application of a Database for a Five-Dimensional Identification of Natural Compounds in Garcinia Species by Means of UPLC-ESI-TWIMS-TOF-MS: Introducing Gas Phase Polyphenol Conformer Drift Time Distribution Intensity Ratios. Journal of Agricultural and Food Chemistry, 67(3), 975–985.
  37. Sullivan, J., Smith, M. L., Espíndola, A., Ruffley, M., Rankin, A., Tank, D., & Carstens, B. (2019). Integrating life history traits into predictive phylogeography. Molecular Ecology, 28(8), 2062–2073.
  38. Swann, H. E., & Brumley, M. R. (2019). Locomotion and posture development in immature male and female rats (Rattus norvegicus): Comparison of sensory-enriched versus sensory-deprived testing environments. Journal of Comparative Psychology (Washington, D.C.: 1983), 133(2), 183–196.
  39. Tao, A., Huang, Y., Shinohara, Y., Caylor, M. L., Pashikanti, S., & Xu, D. (2019). ezCADD: A Rapid 2D/3D Visualization-Enabled Web Modeling Environment for Democratizing Computer-Aided Drug Design. Journal of Chemical Information and Modeling, 59(1), 18–24.
  40. Tao, M., Xu, N., Gao, J., Zhang, W., Li, Y., Bernards, M. T., Shi, Y., He, Y., & Pan, H. (2019). Phase-Change Mechanism for Capturing CO2 into an Environmentally Benign Nonaqueous Solution: A Combined NMR and Molecular Dynamics Simulation Study. Energy & Fuels, 33(1), 474–483.
  41. Theodossiou, S. K., Bozeman, A. L., Burgett, N., Brumley, M. R., Swann, H. E., Raveling, A. R., Becker, J. J., & Schiele, N. R. (2019). Onset of neonatal locomotor behavior and the mechanical development of Achilles and tail tendons. Journal of Biomechanics, 96, 109354.
  42. Theodossiou, S. K., & Schiele, N. R. (2019). Models of tendon development and injury. BMC Biomedical Engineering, 1.
  43. Theodossiou, S. K., Tokle, J., & Schiele, N. R. (2019). TGFβ2-induced tenogenesis impacts cadherin and connexin cell-cell junction proteins in mesenchymal stem cells. Biochemical and Biophysical Research Communications, 508(3), 889–893.
  44. Whitaker-Fornek, J. R., Nelson, J. K., Lybbert, C. W., & Pilarski, J. Q. (2019). Development and regulation of breathing rhythms in embryonic and hatchling birds. Respiratory Physiology & Neurobiology, 269, 103246.
  45. Yang, L., Scott, L., & Wichman, H. A. (2019). Tracing the history of LINE and SINE extinction in sigmodontine rodents. Mobile DNA, 10, 22.
  46. Zhang, J., & Peng, C.-A. (2019). Migration of mesenchymal stem cells tethered with carbon nanotubes under a chemotactic gradient. RSC Advances, 9(13), 7156–7164.


Primarily Undergraduate Institutions

Authors from both Research Intensive and Primarily Undergraduate institutions

  1. Arnett, M., Toevs, S. E., Bond, L., & Hannah, E. (2019). Outcomes of Participation in a Community-Based Physical Activity Program. Frontiers in Public Health, 7, 225.
  2. Covert, H., Mellor, L. F., Wolf, C. L., Ankenbrandt, N., Emathinger, J. M., Tawara, K., Oxford, J. T., & Jorcyk, C. L. (2019). OSM-induced CD44 contributes to breast cancer metastatic potential through cell detachment but not epithelial-mesenchymal transition. Cancer Management and Research, 11, 7721–7737.
  3. Curl, C. L., Porter, J., Penwell, I., Phinney, R., Ospina, M., & Calafat, A. M. (2019). Effect of a 24-week randomized trial of an organic produce intervention on pyrethroid and organophosphate pesticide exposure among pregnant women. Environment International, 132, 104957.
  4. Dagher, G. G., Machado, A. P., Davis, E. C., Green, T., Martin, J., & Ferguson, M. (2019). Data storage in cellular DNA: Contextualizing diverse encoding schemes. Evolutionary Intelligence.
  5. Donovan, B. T., Huynh, A., Ball, D. A., Patel, H. P., Poirier, M. G., Larson, D. R., Ferguson, M. L., & Lenstra, T. L. (2019). Live-cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting. The EMBO Journal, 38(12).
  6. Eixenberger, J. E., Anders, C. B., Wada, K., Reddy, K. M., Brown, R. J., Moreno-Ramirez, J., Weltner, A. E., Karthik, C., Tenne, D. A., Fologea, D., & Wingett, D. G. (2019). Defect Engineering of ZnO Nanoparticles for Bioimaging Applications. ACS Applied Materials & Interfaces, 11(28), 24933–24944.
  7. Estrada, D., Li, Z., Choi, G.-M., Dunham, S. N., Serov, A., Lee, J., Meng, Y., Lian, F., Wang, N. C., Perez, A., Haasch, R. T., Zuo, J.-M., King, W. P., Rogers, J. A., Cahill, D. G., & Pop, E. (2019). Thermal transport in layer-by-layer assembled polycrystalline graphene films. Npj 2D Materials and Applications, 3(1), 1–7.
  8. Evans, J. J., & Bolz, D. D. (2019). Regulation of virulence and antibiotic resistance in Gram-positive microbes in response to cell wall-active antibiotics. Current Opinion in Infectious Diseases, 32(3), 217–222.
  9. Everingham, J. B., Martin, P. T., & Lujan, T. J. (2019). A Hand-Held Device to Apply Instrument-Assisted Soft Tissue Mobilization at Targeted Compression Forces and Stroke Frequencies. Journal of Medical Devices, 13(1), 0145041–0145045.
  10. Fowler, M., Rad, A. M., Utych, S., Adams, A., Alamian, S., Pierce, J., Dennison, P., Abatzoglou, J. T., AghaKouchak, A., Montrose, L., & Sadegh, M. (2019). A dataset on human perception of and response to wildfire smoke. Scientific Data, 6(1), 1–10.
  11. Frahs, S. M., Reeck, J. C., Yocham, K. M., Frederiksen, A., Fujimoto, K., Scott, C. M., Beard, R. S., Brown, R. J., Lujan, T. J., Solov’yov, I. A., Estrada, D., & Oxford, J. T. (2019). Prechondrogenic ATDC5 Cell Attachment and Differentiation on Graphene Foam; Modulation by Surface Functionalization with Fibronectin. ACS Applied Materials & Interfaces, 11(45), 41906–41924.
  12. Hamilton, D., Hamilton, N., & Myers, B. (2019). Evaluation of Image Spatial Resolution for Machine Learning Mapping of Wildland Fire Effects. In K. Arai, S. Kapoor, & R. Bhatia (Eds.), Intelligent Systems and Applications (pp. 400–415). Springer International Publishing.
  13. Ho, E. K. H., Macrae, F., Latta, L. C., Benner, M. J., Sun, C., Ebert, D., & Schaack, S. (2019). Intraspecific Variation in Microsatellite Mutation Profiles in Daphnia magna. Molecular Biology and Evolution, 36(9), 1942–1954.
  14. Hodonu, A., Escobar, M., Beach, L., Hunt, J., & Rose, J. (2019). Glycogen metabolism in mink uterine epithelial cells and its regulation by estradiol, progesterone and insulin. Theriogenology, 130, 62–70.
  15. Hollar, C., Fleming, A., Davis, K., Budwig, R., Jensen, C., & Estrada, D. (2019). A parametric study for in-pile use of the thermal conductivity needle probe using a transient, multilayered analytical model. International Journal of Thermal Sciences, 145, 106028.
  16. Kabir, H., Zhu, H., May, J., Hamal, K., Kan, Y., Williams, T., Echeverria, E., McIlroy, D. N., Estrada, D., Davis, P. H., Pandhi, T., Yocham, K., Higginbotham, K., Clearfield, A., & Cheng, I. F. (2019). The sp2-sp3 carbon hybridization content of nanocrystalline graphite from pyrolyzed vegetable oil, comparison of electrochemistry and physical properties with other carbon forms and allotropes. Carbon, 144, 831–840.
  17. Kondamudi, N., & McDougal, O. M. (2019). Microwave-Assisted Synthesis and Characterization of Stearic Acid Sucrose Ester: A Bio-Based Surfactant. Journal of Surfactants and Detergents, 22(4), 721–729.
  18. LaFoya, B., Munroe, J. A., & Albig, A. R. (2019). A comparison of resveratrol and other polyphenolic compounds on Notch activation and endothelial cell activity. PLOS ONE, 14(1), e0210607.
  19. Lamb, C. L., Price, E., Field, K. P., Dayton, C., McIndoo, E. R., Katahira, E. J., Stevens, D. L., & Hobdey, S. E. (2019). Enrichment of Antigen-Specific Class-Switched B Cells from Individuals Naturally Immunized by Infection with Group A Streptococcus. MSphere, 4(6).
  20. Latta, L. C., Tucker, K. N., & Haney, R. A. (2019). The relationship between oxidative stress, reproduction, and survival in a bdelloid rotifer. BMC Ecology, 19(1), 7.
  21. Laubach, Z. M., Faulk, C. D., Dolinoy, D. C., Montrose, L., Jones, T. R., Ray, D., Pioon, M. O., & Holekamp, K. E. (2019). Early life social and ecological determinants of global DNA methylation in wild spotted hyenas. Molecular Ecology, 28(16), 3799–3812.
  22. Lobb, N. J., Fain, A. C., Seymore, K. D., & Brown, T. N. (2019). Sex and stride length impact leg stiffness and ground reaction forces when running with body borne load. Journal of Biomechanics, 86, 96–101.
  23. Ma, Y., Yang, X., Chatterjee, V., Meegan, J. E., Beard, R. S., & Yuan, S. Y. (2019). Role of Neutrophil Extracellular Traps and Vesicles in Regulating Vascular Endothelial Permeability. Frontiers in Immunology, 10, 1037.
  24. Marquart, L. A., Turner, M. W., & McDougal, O. M. (2019). Qualitative Assay to Detect Dopamine Release by Ligand Action on Nicotinic Acetylcholine Receptors. Toxins, 11(12).
  25. Marquart, L. A., Turner, M. W., Warner, L. R., King, M. D., Groome, J. R., & McDougal, O. M. (2019). Ribbon α-Conotoxin KTM Exhibits Potent Inhibition of Nicotinic Acetylcholine Receptors. Marine Drugs, 17(12).
  26. McGregor, R. C., Parker, K. A., Hornby, J. M., & Latta, L. C. (2019). Microbial population dynamics under microdoses of the essential oil arborvitae. BMC Complementary and Alternative Medicine, 19(1), 247.
  27. Mellor, L. F., Nordberg, R. C., Huebner, P., Mohiti-Asli, M., Taylor, M. A., Efird, W., Oxford, J. T., Spang, J. T., Shirwaiker, R. A., & Loboa, E. G. (2019). Investigation of multiphasic 3D-bioplotted scaffolds for site-specific chondrogenic and osteogenic differentiation of human adipose-derived stem cells for osteochondral tissue engineering applications. Journal of Biomedical Materials Research. Part B, Applied Biomaterials.
  28. Mika, A., Luelling, S. E., Pavek, A., Nartker, C., Heyneman, A. L., Jones, K. B., & Barrott, J. J. (2019). Epigenetic Changes at the Birc5 Promoter Induced by YM155 in Synovial Sarcoma. Journal of Clinical Medicine, 8(3).
  29. Nobler, J. D., Camp, M. J., Crowell, M. M., Shipley, L. A., Dadabay, C., Rachlow, J. L., James, L., & Forbey, J. S. (2019). Preferences of Specialist and Generalist Mammalian Herbivores for Mixtures Versus Individual Plant Secondary Metabolites. Journal of Chemical Ecology, 45(1), 74–85.
  30. Obert, J., & Ferguson, M. (2019). Deep Time Series Neural Networks and Fluorescence Data Stream Noise Detection. In K. Arai, S. Kapoor, & R. Bhatia (Eds.), Intelligent Computing (pp. 18–32). Springer International Publishing.
  31. Oh, K. P., Aldridge, C. L., Forbey, J. S., Dadabay, C. Y., & Oyler-McCance, S. J. (2019). Conservation genomics in the sagebrush sea: Population divergence, demographic history, and local adaptation in sage-grouse (Centrocercus spp.). Genome Biology and Evolution.
  32. Otero, C. E., Noeker, J. A., Brown, M. M., Wavreil, F. D. M., Harvey, W. A., Mitchell, K. A., & Heggland, S. J. (2019). Electronic cigarette liquid exposure induces flavor-dependent osteotoxicity and increases expression of a key bone marker, collagen type I. Journal of Applied Toxicology: JAT, 39(6), 888–898.
  33. Oxford, J. T., Reeck, J. C., & Hardy, M. J. (2019). Extracellular Matrix in Development and Disease. International Journal of Molecular Sciences, 20(1).
  34. Pabis, M., Popowicz, G. M., Stehle, R., Fernández-Ramos, D., Asami, S., Warner, L., García-Mauriño, S. M., Schlundt, A., Martínez-Chantar, M. L., Díaz-Moreno, I., & Sattler, M. (2019). HuR biological function involves RRM3-mediated dimerization and RNA binding by all three RRMs. Nucleic Acids Research, 47(2), 1011–1029.
  35. Pagnotti, G. M., Styner, M., Uzer, G., Patel, V. S., Wright, L. E., Ness, K. K., Guise, T. A., Rubin, J., & Rubin, C. T. (2019). Combating osteoporosis and obesity with exercise: Leveraging cell mechanosensitivity. Nature Reviews. Endocrinology, 15(6), 339–355.
  36. Pollock, T. B., Mack, J. M., Day, R. J., Isho, N. F., Brown, R. J., Oxford, A. E., Morrison, B. E., Hayden, E. J., & Rohn, T. T. (2019). A Fragment of Apolipoprotein E4 Leads to the Downregulation of a CXorf56 Homologue, a Novel ER-Associated Protein, and Activation of BV2 Microglial Cells. Oxidative Medicine and Cellular Longevity, 2019, 5123565.
  37. Rahman, A. A., & Morrison, B. E. (2019). Contributions of VPS35 Mutations to Parkinson’s Disease. Neuroscience, 401, 1–10.
  38. Rastegar, S., Stadlbauer, J., Pandhi, T., Karriem, L., Fujimoto, K., Kramer, K., Estrada, D., & Cantley, K. D. (2019). Measurement of Signal-to-Noise Ratio In Graphene-based Passive Microelectrode Arrays. Electroanalysis, 31(6), 991–1001.
  39. Sane, M. S., Tang, H., Misra, N., Pu, X., Malara, S., Jones, C. D., & Mustafi, S. B. (2019). Characterization of an umbilical cord blood sourced product suitable for allogeneic applications. Regenerative Medicine.
  40. Sankaran, J., Uzer, G., van Wijnen, A. J., & Rubin, J. (2019). Gene regulation through dynamic actin control of nuclear structure. Experimental Biology and Medicine (Maywood, N.J.), 244(15), 1345–1353.
  41. Seymore, K. D., Fain, A. C., Lobb, N. J., & Brown, T. N. (2019). Sex and limb impact biomechanics associated with risk of injury during drop landing with body borne load. PLOS ONE, 14(2), e0211129.
  42. Shin, D., Gorgulla, C., Boursier, M. E., Rexrode, N., Brown, E. C., Arthanari, H., Blackwell, H. E., & Nagarajan, R. (2019). N-Acyl Homoserine Lactone Analog Modulators of the Pseudomonas aeruginosa Rhll Quorum Sensing Signal Synthase. ACS Chemical Biology, 14(10), 2305–2314.
  43. Stavreva, D. A., Garcia, D. A., Fettweis, G., Gudla, P. R., Zaki, G. F., Soni, V., McGowan, A., Williams, G., Huynh, A., Palangat, M., Schiltz, R. L., Johnson, T. A., Presman, D. M., Ferguson, M. L., Pegoraro, G., Upadhyaya, A., & Hager, G. L. (2019). Transcriptional Bursting and Co-bursting Regulation by Steroid Hormone Release Pattern and Transcription Factor Mobility. Molecular Cell, 75(6), 1161-1177.e11.
  44. Stevens, D. L., & Bryant, A. E. (2019). Editorial: Pathogenesis and host response in the era of modern diagnostics: let’s continue the basics. Current Opinion in Infectious Diseases, 32(3), 187–190.
  45. Tawara, K., Scott, H., Emathinger, J., Ide, A., Fox, R., Greiner, D., LaJoie, D., Hedeen, D., Nandakumar, M., Oler, A. J., Holzer, R., & Jorcyk, C. (2019). Co-Expression of VEGF and IL-6 Family Cytokines is Associated with Decreased Survival in HER2 Negative Breast Cancer Patients: Subtype-Specific IL-6 Family Cytokine-Mediated VEGF Secretion. Translational Oncology, 12(2), 245–255.
  46. Tawara, K., Scott, H., Emathinger, J., Wolf, C., LaJoie, D., Hedeen, D., Bond, L., Montgomery, P., & Jorcyk, C. (2019). HIGH expression of OSM and IL-6 are associated with decreased breast cancer survival: Synergistic induction of IL-6 secretion by OSM and IL-1β. Oncotarget, 10(21), 2068–2085.
  47. Touchstone, H., Bryd, R., Loisate, S., Thompson, M., Kim, S., Puranam, K., Senthilnathan, A. N., Pu, X., Beard, R., Rubin, J., Alwood, J., Oxford, J. T., & Uzer, G. (2019). Recovery of stem cell proliferation by low intensity vibration under simulated microgravity requires LINC complex. NPJ Microgravity, 5, 11.
  48. Turner, M. W., Marquart, L. A., Phillips, P. D., & McDougal, O. M. (2019). Mutagenesis of α-Conotoxins for Enhancing Activity and Selectivity for Nicotinic Acetylcholine Receptors. Toxins, 11(2).
  49. Turner, M. W., Rossi, M., Campfield, V., French, J., Hunt, E., Wade, E., & McDougal, O. M. (2019). Steroidal alkaloid variation in Veratrum californicum as determined by modern methods of analytical analysis. Fitoterapia, 137, 104281.
  50. Williams-Godwin, L., Brown, D., Livingston, R., Webb, T., Karriem, L., Graugnard, E., & Estrada, D. (2019). Open-source automated chemical vapor deposition system for the production of two- dimensional nanomaterials. PloS One, 14(1), e0210817.


Community Colleges

  Authors from both Research Intensive institutions and Community Colleges

  1. Nyavor, Y., Estill, R., Edwards, H., Ogden, H., Heideman, K., Starks, K., Miller, C., May, G., Flesch, L., McMillan, J., Gericke, M., Forney, L., & Balemba, O. (2019). Intestinal nerve cell injury occurs prior to insulin resistance in female mice ingesting a high-fat diet. Cell and Tissue Research, 376(3), 325–340.
Journal Articles (2014-2018)

This bibliography includes journal articles by all participants in INBRE 3 in Idaho (2014 – 2018).

  • Christensen QH, Brecht RM, Dudekula D, Greenberg EP, Nagarajan R. 2014. Evolution of acyl-substrate recognition by a family of acyl-homoserine lactone synthases. PLoS ONE 9:e112464.
  • Fortunato EA. 2014. Use of diploid human fibroblasts as a model system to culture, grow, and study human cytomegalovirus infection. Methods Mol Biol 1119:47–57.
  • Groome JR, Jurkat-Rott K, Lehmann-Horn F. 2014. Domain III S4 in closed-state fast inactivation: insights from a periodic paralysis mutation. Channels (Austin) 8:467–471.
  • Hughes AN, Oxford JT. 2014. A lipid-rich gestational diet predisposes offspring to nonalcoholic fatty liver disease: a potential sequence of events. Hepat Med 6:15–23.
  • Hurt RA, Robeson MS, Shakya M, Moberly JG, Vishnivetskaya TA, Gu B, Elias DA. 2014. Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments. PLoS ONE 9:e102826.
  • Li X, Top EM, Wang Y, Brown CJ, Yao F, Yang S, Jiang Y, Li H. 2014. The broad-host-range plasmid pSFA231 isolated from petroleum-contaminated sediment represents a new member of the PromA plasmid family. Front Microbiol 5:777.
  • Pfau JC, Serve KM, Noonan CW. 2014. Autoimmunity and asbestos exposure. Autoimmune Dis 2014:782045.
  • Strain MM, Kauer SD, Kao T, Brumley MR. 2014. Inter- and intralimb adaptations to a sensory perturbation during activation of the serotonin system after a low spinal cord transection in neonatal rats. Front Neural Circuits 8:80.
  • Altieri N, Townsend JT, Wenger MJ. 2014. A measure for assessing the effects of audiovisual speech integration. Behav Res Methods 46:406–415.
  • Kumar P, Baral B, Anderson BA, Guenther DC, Østergaard ME, Sharma PK, Hrdlicka PJ. 2014. C5-alkynyl-functionalized α-L-LNA: synthesis, thermal denaturation experiments and enzymatic stability. J Org Chem 79:5062–5073.
  • Kumar P, Østergaard ME, Baral B, Anderson BA, Guenther DC, Kaura M, Raible DJ, Sharma PK, Hrdlicka PJ. 2014. Synthesis and biophysical properties of C5-functionalized LNA (locked nucleic acid). J Org Chem 79:5047–5061.
  • Kaura M, Guenther DC, Hrdlicka PJ. 2014. Carbohydrate-functionalized locked nucleic acids: oligonucleotides with extraordinary binding affinity, target specificity, and enzymatic stability. Org Lett 16:3308–3311.
  • Baker YS, Agrawal R, Foster JA, Beck D, Dozier G. 2014. APPLYING MACHINE LEARNING TECHNIQUES IN DETECTING BACTERIAL VAGINOSIS. Proc Int Conf Mach Learn Cybern 2014:241–246.
  • Kaura M, Kumar P, Hrdlicka PJ. 2014. Synthesis, hybridization characteristics, and fluorescence properties of oligonucleotides modified with nucleobase-functionalized locked nucleic acid adenosine and cytidine monomers. J Org Chem 79:6256–6268.
  • Din S, Konstandin MH, Johnson B, Emathinger J, Völkers M, Toko H, Collins B, Ormachea L, Samse K, Kubli DA, De La Torre A, Kraft AS, Gustafsson AB, Kelly DP, Sussman MA. 2014. Metabolic dysfunction consistent with premature aging results from deletion of Pim kinases. Circ Res 115:376–387.
  • Mellor LF, Baker TL, Brown RJ, Catlin LW, Oxford JT. 2014. Optimal 3D culture of primary articular chondrocytes for use in the rotating wall vessel bioreactor. Aviat Space Environ Med 85:798–804.
  • Rodnick KJ, Gamperl AK, Nash GW, Syme DA. 2014. Temperature and sex dependent effects on cardiac mitochondrial metabolism in Atlantic cod (Gadus morhua L.). J Therm Biol 44:110–118.
  • de Andrade GB, Long SS, Fleming H, Li W, Fuerst PG. 2014. DSCAM localization and function at the mouse cone synapse. J Comp Neurol 522:2609–2633.
  • Guenther DC, Kumar P, Anderson BA, Hrdlicka PJ. 2014. C5-amino acid functionalized LNA: positively poised for antisense applications. Chem Commun (Camb) 50:9007–9009.
  • Thompson MA, Gutmann A, Seegmiller J, McGowan CP. 2014. The effect of stride length on the dynamics of barefoot and shod running. J Biomech 47:2745–2750.
  • Kengne B-AF, Karmakar S, Kaura M, Sai VVR, Corti G, Niraula IB, Larin A, Hall J, Sowell D, Hrdlicka PJ, Dobrokhotov V, McIlroy DN. 2014. Self-assembled monolayers of thiols adsorbed on Au/ZnO-functionalized silica nanosprings: photoelectron spectroscopy-analysis and detection of vaporized explosives. ACS Appl Mater Interfaces 6:13355–13366.
  • Chandler CM, McDougal OM. 2014. Medicinal history of North American Veratrum. Phytochem Rev 13:671–694.
  • Ferro A, Zebedeo CN, Davis C, Ng KW, Pfau JC. 2014. Amphibole, but not chrysotile, asbestos induces anti-nuclear autoantibodies and IL-17 in C57BL/6 mice. J Immunotoxicol 11:283–290.
  • Nuhn JS, Fuerst PG. 2014. Developmental localization of adhesion and scaffolding proteins at the cone synapse. Gene Expr Patterns 16:36–50.
  • Sherpa T, Lankford T, McGinn TE, Hunter SS, Frey RA, Sun C, Ryan M, Robison BD, Stenkamp DL. 2014. Retinal regeneration is facilitated by the presence of surviving neurons. Dev Neurobiol 74:851–876.
  • Jacobs JC, Shea KG, Oxford JT, Carey JL. 2014. Fluoroquinolone use in a child associated with development of osteochondritis dissecans. BMJ Case Rep 2014.
  • Jones-Mensah E, Magolan J. 2014. Aryl methyl sulfides via SNAr using DMSO as the source of the thiomethyl moiety. Tetrahedron Letters 55:5323–5326.
  • Altieri N, Hudock D. 2014. Assessing variability in audiovisual speech integration skills using capacity and accuracy measures. Int J Audiol 53:710–718.
  • Letzring TD, Human LJ. 2014. An examination of information quality as a moderator of accurate personality judgment. J Pers 82:440–451.
  • Yang L, Chiu SC, Liao W-K, Thomas MA. 2014. High Performance Data Clustering: A Comparative Analysis of Performance for GPU, RASC, MPI, and OpenMP Implementations. J Supercomput 70:284–300.
  • Bezzerides AL, Loofbourrow SA. 2014. Melanic Facial Patterns and their Significance in the Multicolored Asian Lady Beetle (Harmonia axyridis). Am Midl Nat 172:366–371.
  • Montebello AN, Brecht RM, Turner RD, Ghali M, Pu X, Nagarajan R. 2014. Acyl-ACP substrate recognition in Burkholderia mallei BmaI1 acyl-homoserine lactone synthase. Biochemistry 53:6231–6242.
  • Edgehouse M, Brown CP. 2014. Predatory luring behavior of odonates. J Insect Sci 14:146.
  • Karmakar S, Madsen AS, Guenther DC, Gibbons BC, Hrdlicka PJ. 2014. Recognition of double-stranded DNA using energetically activated duplexes with interstrand zippers of 1-, 2- or 4-pyrenyl-functionalized O2’-alkylated RNA monomers. Org Biomol Chem 12:7758–7773.
  • Belnap SC, Allmond JT, Boomhower SR, Roberto ME, Brumley MR. 2014. Sensorimotor training during expression of the leg extension response (LER) in 1-day-old rats. Dev Psychobiol 56:1553–1563.
  • Stevenson RA, Ghose D, Fister JK, Sarko DK, Altieri NA, Nidiffer AR, Kurela LR, Siemann JK, James TW, Wallace MT. 2014. Identifying and quantifying multisensory integration: a tutorial review. Brain Topogr 27:707–730.
  • Strain MM, Brumley MR. 2014. Range of motion (ROM) restriction influences quipazine-induced stepping behavior in postnatal day one and day ten rats. Behav Brain Res 274:365–381.
  • Battiprolu PK, Rodnick KJ. 2014. Dichloroacetate selectively improves cardiac function and metabolism in female and male rainbow trout. Am J Physiol Heart Circ Physiol 307:H1401-1411.
  • Hickey RJ, Forney LJ. 2014. Gardnerella vaginalis does not always cause bacterial vaginosis. J Infect Dis 210:1682–1683.
  • Takabayashi S, Klein WP, Onodera C, Rapp B, Flores-Estrada J, Lindau E, Snowball L, Sam JT, Padilla JE, Lee J, Knowlton WB, Graugnard E, Yurke B, Kuang W, Hughes WL. 2014. High precision and high yield fabrication of dense nanoparticle arrays onto DNA origami at statistically independent binding sites. Nanoscale 6:13928–13938.
  • Boomhower SR, Rasmussen EB. 2014. Haloperidol and rimonabant increase delay discounting in rats fed high-fat and standard-chow diets. Behav Pharmacol 25:705–716.
  • Jayaram A, Witkin SS, Zhou X, Brown CJ, Rey GE, Linhares IM, Ledger WJ, Forney LJ. 2014. The bacterial microbiome in paired vaginal and vestibular samples from women with vulvar vestibulitis syndrome. Pathog Dis 72:161–166.
  • Lee DV, Isaacs MR, Higgins TE, Biewener AA, McGowan CP. 2014. Scaling of the spring in the leg during bouncing gaits of mammals. Integr Comp Biol 54:1099–1108.
  • Murdock M, Holman RW, Slade T, Clark SLD, Rodnick KJ. 2014. An Introductory Organic Chemistry Review Homework Exercise: Deriving Potential Mechanisms for Glucose Ring Opening in Mutarotation. J Chem Educ 91:2146–2147.
  • Beck D, Foster JA. 2015. Machine learning classifiers provide insight into the relationship between microbial communities and bacterial vaginosis. BioData Min 8:23.
  • Chikh-Ali M, Karasev AV. 2015. Immunocapture-Multiplex RT-PCR for the Simultaneous Detection and Identification of Plant Viruses and Their Strains: Study Case, Potato Virus Y (PVY). Methods Mol Biol 1302:177–186.
  • Cresawn SG, Pope WH, Jacobs-Sera D, Bowman CA, Russell DA, Dedrick RM, Adair T, Anders KR, Ball S, Bollivar D, Breitenberger C, Burnett SH, Butela K, Byrnes D, Carzo S, Cornely KA, Cross T, Daniels RL, Dunbar D, Findley AM, Gissendanner CR, Golebiewska UP, Hartzog GA, Hatherill JR, Hughes LE, Jalloh CS, De Los Santos C, Ekanem K, Khambule SL, King RA, King-Smith C, Klyczek K, Krukonis GP, Laing C, Lapin JS, Lopez AJ, Mkhwanazi SM, Molloy SD, Moran D, Munsamy V, Pacey E, Plymale R, Poxleitner M, Reyna N, Schildbach JF, Stukey J, Taylor SE, Ware VC, Wellmann AL, Westholm D, Wodarski D, Zajko M, Zikalala TS, Hendrix RW, Hatfull GF. 2015. Comparative genomics of Cluster O mycobacteriophages. PLoS ONE 10:e0118725.
  • Damase TR, Stephens D, Spencer A, Allen PB. 2015. Open source and DIY hardware for DNA nanotechnology labs. J Biol Methods 2:e24.
  • Day RJ, Mason MJ, Thomas C, Poon WW, Rohn TT. 2015. Caspase-Cleaved Tau Co-Localizes with Early Tangle Markers in the Human Vascular Dementia Brain. PLoS ONE 10:e0132637.
  • Eakle WL, Bond L, Fuller MR, Fischer RA, Steenhof K. 2015. Wintering Bald Eagle Count Trends in the Conterminous United States, 1986-2010. J Raptor Res 49:259–268.
  • Goyden J, Tawara K, Hedeen D, Willey JS, Oxford JT, Jorcyk CL. 2015. The Effect of OSM on MC3T3-E1 Osteoblastic Cells in Simulated Microgravity with Radiation. PLoS ONE 10:e0127230.
  • Hafez A, Squires R, Pedracini A, Joshi A, Seegmiller RE, Oxford JT. 2015. Col11a1 Regulates Bone Microarchitecture during Embryonic Development. J Dev Biol 3:158–176.
  • Hennig J, Warner LR, Simon B, Geerlof A, Mackereth CD, Sattler M. 2015. Structural Analysis of Protein-RNA Complexes in Solution Using NMR Paramagnetic Relaxation Enhancements. Meth Enzymol 558:333–362.
  • Kirol CP, Sutphin AL, Bond L, Fuller MR, Maechtle TL. 2015. Mitigation effectiveness for improving nesting success of greater sage-grouse influenced by energy development. Wildlife Biol 21:98–109.
  • Martorelli L, Hovde CJ, Vilte DA, Albanese A, Zotta E, Ibarra C, Cantet RJC, Mercado EC, Cataldi A. 2015. Impact of Infection Dose and Previous Serum Antibodies against the Locus of Enterocyte Effacement Proteins on Escherichia coli O157:H7 Shedding in Calves following Experimental Infection. Biomed Res Int 2015:290679.
  • Pandey R, Botros MA, Nacev BA, Albig AR. 2015. Cyclosporin a disrupts notch signaling and vascular lumen maintenance. PLoS ONE 10:e0119279.
  • Pu X, Oxford JT. 2015. Proteomic Analysis of Engineered Cartilage. Methods Mol Biol 1340:263–278.
  • Stenkamp DL. 2015. Development of the Vertebrate Eye and Retina. Prog Mol Biol Transl Sci 134:397–414.
  • Aldape MJ, Heeney DD, Bryant AE, Stevens DL. 2015. Tigecycline suppresses toxin A and B production and sporulation in Clostridium difficile. J Antimicrob Chemother 70:153–159.
  • Hu H, Banerjee S, Estrada D, Bashir R, King WP. 2015. Tip-Based Nanofabrication of Arbitrary Shapes of Graphene Nanoribbons for Device Applications. RSC Adv 5:37006–37012.
  • Preece EP, Moore BC, Hardy FJ, Deobald LA. 2015. First detection of microcystin in Puget Sound, Washington, mussels (Mytilus trossulus). Lake and Reservoir Management 31:50–54.
  • Bolz DD, Li Z, McIndoo ER, Tweten RK, Bryant AE, Stevens DL. 2015. Cardiac myocyte dysfunction induced by streptolysin O is membrane pore and calcium dependent. Shock 43:178–184.
  • Liu T, Singh R, Rios Z, Bhushan A, Li M, Sheridan PP, Bearden SE, Lai JCK, Agbenowu S, Cao S, Daniels CK. 2015. Tyrosine phosphorylation of HSC70 and its interaction with RFC mediates methotrexate resistance in murine L1210 leukemia cells. Cancer Lett 357:231–241.
  • Sam Ma Z, Guan Q, Ye C, Zhang C, Foster JA, Forney LJ. 2015. Network analysis suggests a potentially “evil” alliance of opportunistic pathogens inhibited by a cooperative network in human milk bacterial communities. Sci Rep 5:8275.
  • Beck D, Dennis C, Foster JA. 2015. Seed: a user-friendly tool for exploring and visualizing microbial community data. Bioinformatics 31:602–603.
  • Remien CH. 2015. Modeling the dynamics of stable isotope tissue-diet enrichment. J Theor Biol 367:14–20.
  • Liang S, Gliniewicz K, Mendes-Soares H, Settles ML, Forney LJ, Coats ER, McDonald AG. 2015. Comparative analysis of microbial community of novel lactic acid fermentation inoculated with different undefined mixed cultures. Bioresour Technol 179:268–274.
  • Ryan RE, Martin B, Mellor L, Jacob RB, Tawara K, McDougal OM, Oxford JT, Jorcyk CL. 2015. Oncostatin M binds to extracellular matrix in a bioactive conformation: implications for inflammation and metastasis. Cytokine 72:71–85.
  • Letzring TD, Adamcik LA. 2015. Personality traits and affective states: Relationships with and without affect induction. Personality and Individual Differences 75:114–120.
  • Cannon BL, Kellis DL, Davis PH, Lee J, Kuang W, Hughes WL, Graugnard E, Yurke B, Knowlton WB. 2015. Excitonic AND Logic Gates on DNA Brick Nanobreadboards. ACS Photonics 2:398–404.
  • Grate JW, Mo K-F, Shin Y, Vasdekis A, Warner MG, Kelly RT, Orr G, Hu D, Dehoff KJ, Brockman FJ, Wilkins MJ. 2015. Alexa fluor-labeled fluorescent cellulose nanocrystals for bioimaging solid cellulose in spatially structured microenvironments. Bioconjug Chem 26:593–601.
  • Loftie-Eaton W, Suzuki H, Bashford K, Heuer H, Stragier P, De Vos P, Settles ML, Top EM. 2015. Draft Genome Sequence of Pseudomonas sp. nov. H2. Genome Announc 3.
  • Karki M, Magolan J. 2015. Bromination of olefins with HBr and DMSO. J Org Chem 80:3701–3707.
  • Li S, Sukeena JM, Simmons AB, Hansen EJ, Nuhn RE, Samuels IS, Fuerst PG. 2015. DSCAM promotes refinement in the mouse retina through cell death and restriction of exploring dendrites. J Neurosci 35:5640–5654.
  • Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF, Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science, Phage Hunters Integrating Research and Education, Mycobacterial Genetics Course. 2015. Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity. Elife 4:e06416.
  • Brumley MR, Kauer SD, Swann HE. 2015. Developmental plasticity of coordinated action patterns in the perinatal rat. Dev Psychobiol 57:409–420.
  • Kohl KD, Pitman E, Robb BC, Connelly JW, Dearing MD, Forbey JS. 2015. Monoterpenes as inhibitors of digestive enzymes and counter-adaptations in a specialist avian herbivore. J Comp Physiol B, Biochem Syst Environ Physiol 185:425–434.
  • Samse K, Emathinger J, Hariharan N, Quijada P, Ilves K, Völkers M, Ormachea L, De La Torre A, Orogo AM, Alvarez R, Din S, Mohsin S, Monsanto M, Fischer KM, Dembitsky WP, Gustafsson ÅB, Sussman MA. 2015. Functional Effect of Pim1 Depends upon Intracellular Localization in Human Cardiac Progenitor Cells. J Biol Chem 290:13935–13947.
  • Bryant AE, Bayer CR, Aldape MJ, Stevens DL. 2015. The roles of injury and nonsteroidal anti-inflammatory drugs in the development and outcomes of severe group A streptococcal soft tissue infections. Curr Opin Infect Dis 28:231–239.
  • Kudva IT, Krastins B, Torres AG, Griffin RW, Sheng H, Sarracino DA, Hovde CJ, Calderwood SB, John M. 2015. The Escherichia coli O157:H7 cattle immunoproteome includes outer membrane protein A (OmpA), a modulator of adherence to bovine rectoanal junction squamous epithelial (RSE) cells. Proteomics 15:1829–1842.
  • Mendes-Soares H, Krishnan V, Settles ML, Ravel J, Brown CJ, Forney LJ. 2015. Fine-scale analysis of 16S rRNA sequences reveals a high level of taxonomic diversity among vaginal Atopobium spp. Pathog Dis 73.
  • Zhan YA, Ytreberg FM. 2015. The cis conformation of proline leads to weaker binding of a p53 peptide to MDM2 compared to trans. Arch Biochem Biophys 575:22–29.
  • Zhbannikov IY, Foster JA. 2015. MetAmp: combining amplicon data from multiple markers for OTU analysis. Bioinformatics 31:1830–1832.
  • Anderson BA, Onley JJ, Hrdlicka PJ. 2015. Recognition of Double-Stranded DNA Using Energetically Activated Duplexes Modified with N2’-Pyrene-, Perylene-, or Coronene-Functionalized 2’-N-Methyl-2’-amino-DNA Monomers. J Org Chem 80:5395–5406.
  • Goltry S, Hallstrom N, Clark T, Kuang W, Lee J, Jorcyk C, Knowlton WB, Yurke B, Hughes WL, Graugnard E. 2015. DNA topology influences molecular machine lifetime in human serum. Nanoscale 7:10382–10390.
  • Chikh-Ali M, Alruwaili H, Vander Pol D, Karasev AV. 2015. Molecular Characterization of Recombinant Strains of Potato virus Y From Saudi Arabia. Plant Disease 100:292–297.
  • Long T, McDougal OM, Andersen T. 2015. GAMPMS: Genetic algorithm managed peptide mutant screening. J Comput Chem 36:1304–1310.
  • Kaura M, Hrdlicka PJ. 2015. Locked nucleic acid (LNA) induced effect on the hybridization and fluorescence properties of oligodeoxyribonucleotides modified with nucleobase-functionalized DNA monomers. Org Biomol Chem 13:7236–7247.
  • Xiao Y, Warner LR, Latham MP, Ahn NG, Pardi A. 2015. Structure-Based Assignment of Ile, Leu, and Val Methyl Groups in the Active and Inactive Forms of the Mitogen-Activated Protein Kinase Extracellular Signal-Regulated Kinase 2. Biochemistry 54:4307–4319.
  • Anderson BA, Karmakar S, Hrdlicka PJ. 2015. Mixed-Sequence Recognition of Double-Stranded DNA Using Enzymatically Stable Phosphorothioate Invader Probes. Molecules 20:13780–13793.
  • Carlin DJ, Larson TC, Pfau JC, Gavett SH, Shukla A, Miller A, Hines R. 2015. Current Research and Opportunities to Address Environmental Asbestos Exposures. Environ Health Perspect 123:A194-197.
  • Mitchell DM, Stevens CB, Frey RA, Hunter SS, Ashino R, Kawamura S, Stenkamp DL. 2015. Retinoic Acid Signaling Regulates Differential Expression of the Tandemly-Duplicated Long Wavelength-Sensitive Cone Opsin Genes in Zebrafish. PLoS Genet 11:e1005483.
  • Stenkamp-Strahm CM, Nyavor YEA, Kappmeyer AJ, Horton S, Gericke M, Balemba OB. 2015. Prolonged high fat diet ingestion, obesity, and type 2 diabetes symptoms correlate with phenotypic plasticity in myenteric neurons and nerve damage in the mouse duodenum. Cell Tissue Res 361:411–426.
  • Guenther DC, Anderson GH, Karmakar S, Anderson BA, Didion BA, Guo W, Verstegen JP, Hrdlicka PJ. 2015. Invader probes: Harnessing the energy of intercalation to facilitate recognition of chromosomal DNA for diagnostic applications. Chem Sci 6:5006–5015.
  • Nadelson LS, Scaggs J, Sheffield C, McDougal OM. 2015. Integration of Video-Based Demonstrations to Prepare Students for the Organic Chemistry Laboratory. J Sci Educ Technol 24:476–483.
  • Belthoff JR, Bernhardt SA, Ball CL, Gregg M, Johnson DH, Ketterling R, Price E, Tinker JK. 2015. Burrowing Owls, Pulex irritans, and Plague. Vector Borne Zoonotic Dis 15:556–564.
  • Kebaabetswe LP, Haick AK, Gritsenko MA, Fillmore TL, Chu RK, Purvine SO, Webb-Robertson B-J, Matzke MM, Smith RD, Waters KM, Metz TO, Miura TA. 2015. Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus. Virology 483:96–107.
  • Chikh-Ali M, Bosque-Pérez NA, Vander Pol D, Sembel D, Karasev AV. 2015. Occurrence and Molecular Characterization of Recombinant Potato virus YNTN Isolates from Sulawesi, Indonesia. Plant Disease 100:269–275.
  • Anderson BA, Hrdlicka PJ. 2015. Synthesis and characterization of oligodeoxyribonucleotides modified with 2’-thio-2’-deoxy-2’-S-(pyren-1-yl)methyluridine. Bioorg Med Chem Lett 25:3999–4004.
  • Quijada P, Salunga HT, Hariharan N, Cubillo JD, El-Sayed FG, Moshref M, Bala KM, Emathinger JM, De La Torre A, Ormachea L, Alvarez R, Gude NA, Sussman MA. 2015. Cardiac Stem Cell Hybrids Enhance Myocardial Repair. Circ Res 117:695–706.
  • Hyslop JS, Boydstun AR, Fereday TR, Rusch JR, Strunk JL, Wall CT, Pena CC, McKibben NL, Harris JD, Thurber A, Punnoose A, Brotherton J, Walker P, Lowe L, Rapp B, Purnell S, Knowlton WB, Hubbard SM, Frost BJ. 2015. Synthesis and characterization of [Zn(acetate)2(amine)x] compounds (x = 1 or 2) and their use as precursors to ZnO. Mater Sci Semicond Process 38:278–289.
  • McDougal OM, Heenan PB, Jaksons P, Sansom CE, Smallfield BM, Perry NB, van Klink JW. 2015. Alkaloid variation in New Zealand kōwhai, Sophora species. Phytochemistry 118:9–16.
  • Quijada P, Hariharan N, Cubillo JD, Bala KM, Emathinger JM, Wang BJ, Ormachea L, Bers DM, Sussman MA, Poizat C. 2015. Nuclear Calcium/Calmodulin-dependent Protein Kinase II Signaling Enhances Cardiac Progenitor Cell Survival and Cardiac Lineage Commitment. J Biol Chem 290:25411–25426.
  • Guenther DC, Karmakar S, Hrdlicka PJ. 2015. Bulged Invader probes: activated duplexes for mixed-sequence dsDNA recognition with improved thermodynamic and kinetic profiles. Chem Commun (Camb) 51:15051–15054.
  • Dhakal S, Stevens CB, Sebbagh M, Weiss O, Frey RA, Adamson S, Shelden EA, Inbal A, Stenkamp DL. 2015. Abnormal retinal development in Cloche mutant zebrafish. Dev Dyn 244:1439–1455.
  • Feng X, Myers JR, Karasev AV. 2015. Bean common mosaic virus Isolate Exhibits a Novel Pathogenicity Profile in Common Bean, Overcoming the bc-3 Resistance Allele Coding for the Mutated eIF4E Translation Initiation Factor. Phytopathology 105:1487–1495.
  • Mayo JN, Bearden SE. 2015. Driving the Hypoxia-Inducible Pathway in Human Pericytes Promotes Vascular Density in an Exosome-Dependent Manner. Microcirculation 22:711–723.
  • Stojkovska I, Wagner BM, Morrison BE. 2015. Parkinson’s disease and enhanced inflammatory response. Exp Biol Med (Maywood) 240:1387–1395.
  • Sheng H, Shringi S, Baker KNK, Minnich SA, Hovde CJ, Besser TE. 2015. Standardized Escherichia coli O157:H7 Exposure Studies in Cattle Provide Evidence that Bovine Factors Do Not Drive Increased Summertime Colonization. Appl Environ Microbiol 82:964–971.
  • Groome JR, Winston V. 2015. Correction: S1-S3 counter charges in the voltage sensor module of a mammalian sodium channel regulate fast inactivation. J Gen Physiol 146:541–546.
  • Shin D, Frane ND, Brecht RM, Keeler J, Nagarajan R. 2015. A Comparative Analysis of Acyl-Homoserine Lactone Synthase Assays. Chembiochem 16:2651–2659.
  • Mallory CM, Carfi RP, Moon S, Cornell KA, Warner DL. 2015. Modification of cellular DNA by synthetic aziridinomitosenes. Bioorg Med Chem 23:7378–7385.
  • Vasdekis AE, Silverman AM, Stephanopoulos G. 2015. Origins of Cell-to-Cell Bioprocessing Diversity and Implications of the Extracellular Environment Revealed at the Single-Cell Level. Sci Rep 5:17689.
  • Zavala AG, O’Dowd JM, Fortunato EA. 2015. Infection of a Single Cell Line with Distinct Strains of Human Cytomegalovirus Can Result in Large Variations in Virion Production and Facilitate Efficient Screening of Virus Protein Function. J Virol 90:2523–2535.
  • Altieri N, Hudock D. 2016. Normative data on audiovisual speech integration using sentence recognition and capacity measures. Int J Audiol 55:206–214.
  • Brown CJ, Quates CJ, Mirabzadeh CA, Miller CR, Wichman HA, Miura TA, Ytreberg FM. 2016. New Perspectives on Ebola Virus Evolution. PLoS ONE 11:e0160410.
  • Greene CS, Foster JA, Stanton BA, Hogan DA, Bromberg Y. 2016. COMPUTATIONAL APPROACHES TO STUDY MICROBES AND MICROBIOMES. Pac Symp Biocomput 21:557–567.
  • Kingston M, Pfau JC, Gilmer J, Brey R. 2016. Selective inhibitory effects of 50-nm gold nanoparticles on mouse macrophage and spleen cells. J Immunotoxicol 13:198–208.
  • Lamb CL, Cholico GN, Perkins DE, Fewkes MT, Oxford JT, Lujan TJ, Morrill EE, Mitchell KA. 2016. Aryl Hydrocarbon Receptor Activation by TCDD Modulates Expression of Extracellular Matrix Remodeling Genes during Experimental Liver Fibrosis. Biomed Res Int 2016:5309328.
  • Li S, Mitchell J, Briggs DJ, Young JK, Long SS, Fuerst PG. 2016. Morphological Diversity of the Rod Spherule: A Study of Serially Reconstructed Electron Micrographs. PLoS ONE 11:e0150024.
  • Miller CR, Johnson EL, Burke AZ, Martin KP, Miura TA, Wichman HA, Brown CJ, Ytreberg FM. 2016. Initiating a watch list for Ebola virus antibody escape mutations. PeerJ 4:e1674.
  • Oxford AE, Jorcyk CL, Oxford JT. 2016. Neuropathies of Stüve-Wiedemann Syndrome due to mutations in leukemia inhibitory factor receptor (LIFR) gene. J Neurol Neuromedicine 1:37–44.
  • Simmons AB, Bloomsburg SJ, Billingslea SA, Merrill MM, Li S, Thomas MW, Fuerst PG. 2016. Pou4f2 knock-in Cre mouse: A multifaceted genetic tool for vision researchers. Mol Vis 22:705–717.
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  • Yocham KM, Scott C, Fujimoto K, Brown R, Tanasse E, Oxford JT, Lujan TJ, Estrada D. Mechanical Properties of Graphene Foam and Graphene Foam – Tissue Composites. Adv Eng Mater. 2018 Sep;20(9). PMCID: PMC6301055
  • Swann HE, Brumley MR. Locomotion and posture development in immature male and female rats (Rattus norvegicus): Comparison of sensory-enriched versus sensory-deprived testing environments. J Comp Psychol. 2018 Nov 1; PMID: 30382711
  • Sane MS, Misra N, Mousa OM, Czop S, Tang H, Khoo LT, Jones CD, Mustafi SB. Cytokines in umbilical cord blood-derived cellular product: a mechanistic insight into bone repair. Regen Med. 2018 Oct 22; PMID: 30346891
  • LaFoya B, Munroe JA, Pu X, Albig AR. Src kinase phosphorylates Notch1 to inhibit MAML binding. Sci Rep. 2018 Oct 19;8(1):15515. PMCID: PMC6195628
  • Gunderson MP, Nguyen BT, Cervantes Reyes JC, Holden LL, French JMT, Smith BD, Lineberger C. Response of phase I and II detoxification enzymes, glutathione, metallothionein and acetylcholine esterase to mercury and dimethoate in signal crayfish (Pacifastacus leniusculus). Chemosphere. 2018 Oct;208:749–756. PMCID: PMC6074053
  • Boursier ME, Moore JD, Heitman KM, Shepardson-Fungairino SP, Combs JB, Koenig LC, Shin D, Brown EC, Nagarajan R, Blackwell HE. Structure-Function Analyses of the N-Butanoyl l-Homoserine Lactone Quorum-Sensing Signal Define Features Critical to Activity in RhlR. ACS Chem Biol. 2018 Sep 21;13(9):2655–2662. PMCID: PMC6200399
  • Strong AD, Indart MC, Hill NR, Daniels RL. GL261 glioma tumor cells respond to ATP with an intracellular calcium rise and glutamate release. Mol Cell Biochem. 2018 Sep;446(1–2):53–62. PMCID: PMC6037622
  • DePompeo CM, Bond L, George YE, Mezzles MJ, Brourman JD, Chandler JC, Murphy SM, Pike F, Mason DR. Intra-abdominal complications following intestinal anastomoses by suture and staple techniques in dogs. J Am Vet Med Assoc. 2018 Aug 15;253(4):437–443. PMID: 30058972
  • Nhu Lam M, Dudekula D, Durham B, Collingwood N, Brown EC, Nagarajan R. Insights into β-ketoacyl-chain recognition for β-ketoacyl-ACP utilizing AHL synthases. Chem Commun (Camb). 2018 Aug 7;54(64):8838–8841. PMID: 30027952
  • Lawrence BJ, Luciano M, Tew J, Ellenbogen RG, Oshinski JN, Loth F, Culley AP, Martin BA. Cardiac-Related Spinal Cord Tissue Motion at the Foramen Magnum is Increased in Patients with Type I Chiari Malformation and Decreases Postdecompression Surgery. World Neurosurg. 2018 Aug;116:e298–e307. PMCID: PMC6063776
  • Bayless-Edwards L, Winston V, Lehmann-Horn F, Arinze P, Groome JR, Jurkat-Rott K. NaV1.4 DI-S4 periodic paralysis mutation R222W enhances inactivation and promotes leak current to attenuate action potentials and depolarize muscle fibers. Sci Rep. 2018 Jul 10;8(1):10372. PMCID: PMC6039468
  • Culbertson VL, Rahman SE, Bosen GC, Caylor ML, Echevarria MM, Xu D. Implications of Off-Target Serotoninergic Drug Activity: An Analysis of Serotonin Syndrome Reports Using a Systematic Bioinformatics Approach. Pharmacotherapy. 2018 Jul 4; PMID: 29972695
  • Thyagaraj S, Pahlavian SH, Sass LR, Loth F, Vatani M, Choi J-W, Tubbs RS, Giese D, Kroger J-R, Bunck AC, Martin BA, Thyagaraj S, Pahlavian SH, Sass LR, Loth F, Vatani M, Jae-Won Choi null, Tubbs RS, Giese D, Kroger J-R, Bunck AC, Martin BA, Vatani M, Martin BA, Choi J-W, Loth F, Bunck AC, Kroger J-R, Pahlavian SH, Sass LR, Tubbs RS, Thyagaraj S, Giese D. An MRI-Compatible Hydrodynamic Simulator of Cerebrospinal Fluid Motion in the Cervical Spine. IEEE Trans Biomed Eng. 2018 Jul;65(7):1516–1523. PMCID: PMC6025821
  • Misra N, Pu X, Holt DN, McGuire MA, Tinker JK. Immunoproteomics to identify Staphylococcus aureus antigens expressed in bovine milk during mastitis. J Dairy Sci. 2018 Jul;101(7):6296–6309. PMID: 29729920
  • Duan M, Hunter SS, Minnich SA, Fagnan MW, New DD, Hovde CJ, Sheng H. Complete Genome Sequence of Broad-Host-Range Shiga Toxin-Converting Bacteriophage SH2026Stx1, Isolated from Escherichia coli O157:H7. Genome Announc. 2018 Jun 21;6(25). PMCID: PMC6013618
  • Tawara K, Bolin C, Koncinsky J, Kadaba S, Covert H, Sutherland C, Bond L, Kronz J, Garbow JR, Jorcyk CL. OSM potentiates preintravasation events, increases CTC counts, and promotes breast cancer metastasis to the lung. Breast Cancer Res. 2018 Jun 14;20(1):53. PMCID: PMC6001163
  • Frahs SM, Oxford JT, Neumann EE, Brown RJ, Keller-Peck CR, Pu X, Lujan TJ. Extracellular Matrix Expression and Production in Fibroblast-Collagen Gels: Towards an In Vitro Model for Ligament Wound Healing. Ann Biomed Eng. 2018 Jun 5; PMID: 29873012
  • Bowman RM, Schmidt S, Weeks C, Clark H, Brown C, Latta LC, Edgehouse M. Phenotypic plasticity in a population of odonates. Sci Rep. 2018 May 31;8(1):8442. PMCID: PMC5981427
  • Mitchell DM, Lovel AG, Stenkamp DL. Dynamic changes in microglial and macrophage characteristics during degeneration and regeneration of the zebrafish retina. J Neuroinflammation. 2018 May 28;15(1):163. PMCID: PMC5971432
  • Robertson JC, Jorcyk CL, Oxford JT. DICER1 Syndrome: DICER1 Mutations in Rare Cancers. Cancers (Basel). 2018 May 15;10(5). PMCID: PMC5977116
  • King MD, Long T, Pfalmer DL, Andersen TL, McDougal OM. SPIDR: small-molecule peptide-influenced drug repurposing. BMC Bioinformatics. 2018 Apr 16;19(1):138. PMCID: PMC5902895
  • Stender CJ, Rust E, Martin PT, Neumann EE, Brown RJ, Lujan TJ. Modeling the effect of collagen fibril alignment on ligament mechanical behavior. Biomech Model Mechanobiol. 2018 Apr;17(2):543–557. PMCID: PMC5880545
  • Anwar M, Turner M, Farrell N, Zomlefer WB, McDougal OM, Morgan BW. Hikers poisoned: Veratrum steroidal alkaloid toxicity following ingestion of foraged Veratrum parviflorum. Clin Toxicol (Phila). 2018 Feb 28;1–5. PMID: 29490507
  • LaFoya B, Munroe JA, Miyamoto A, Detweiler MA, Crow JJ, Gazdik T, Albig AR. Beyond the Matrix: The Many Non-ECM Ligands for Integrins. Int J Mol Sci. 2018 Feb 2;19(2). PMCID: PMC5855671
  • Anders CB, Eixenberger JE, Franco NA, Hermann RJ, Rainey KD, Chess JJ, Punnoose A, Wingett DG. ZnO nanoparticle preparation route influences surface reactivity, dissolution and cytotoxicity. Environ Sci Nano. 2018 Feb 1;5(2):572–588. PMCID: PMC5823520
  • Ruffley M, Smith ML, Espíndola A, Carstens BC, Sullivan J, Tank DC. Combining allele frequency and tree-based approaches improves phylogeographic inference from natural history collections. Mol Ecol. 2018 Feb;27(4):1012–1024. PMCID: PMC5878120
  • McGinn TE, Mitchell DM, Meighan PC, Partington N, Leoni DC, Jenkins CE, Varnum MD, Stenkamp DL. Restoration of Dendritic Complexity, Functional Connectivity, and Diversity of Regenerated Retinal Bipolar Neurons in Adult Zebrafish. J Neurosci. 2018 Jan 3;38(1):120–136. PMCID: PMC5761431
  • Eberle S, Dezoumbe D, McGregor R, Kinzer S, Raver W, Schaack S, Latta LC. Hierarchical Assessment of Mutation Properties in Daphnia magna. G3 (Bethesda). 2018 06;8(11):3481–3487. PMCID: PMC6222573
  • Misra N, Wines TF, Knopp CL, Hermann R, Bond L, Mitchell B, McGuire MA, Tinker JK. Immunogenicity of a Staphylococcus aureus-cholera toxin A2/B vaccine for bovine mastitis. Vaccine. 2018 07;36(24):3513–3521. PMCID: PMC6014625
  • Addo-Quaye C, Tuinstra M, Carraro N, Weil C, Dilkes BP. Whole-Genome Sequence Accuracy Is Improved by Replication in a Population of Mutagenized Sorghum. G3 (Bethesda). 2018 02;8(3):1079–1094. PMCID: PMC5844295
  • Sun C, Galicia C, Stenkamp DL. Transcripts within rod photoreceptors of the Zebrafish retina. BMC Genomics. 2018 08;19(1):127. PMCID: PMC5806438
  • Damase TR, Miura TA, Parent CE, Allen PB. Application of the Open qPCR Instrument for the in Vitro Selection of DNA Aptamers against Epidermal Growth Factor Receptor and Drosophila C Virus. ACS Comb Sci. 2018 12;20(2):45–54. PMID: 29293309
  • Rohn TT, Mack JM. Apolipoprotein E Fragmentation within Lewy Bodies of the Human Parkinson’s Disease Brain. Int J Neurodegener Dis. 2018;1(1). PMCID: PMC6159338
  • Raveling AR, Theodossiou SK, Schiele NR. A 3D printed mechanical bioreactor for investigating mechanobiology and soft tissue mechanics. MethodsX. 2018;5:924–932. PMCID: PMC6111048
  • Johnson NA, Wolfe SR, Kabir H, Andrade GA, Yap GPA, Heiden ZM, Moberly JG, Roll MF, Waynant KV. Deconvoluting the Innocent vs. Non-innocent Behavior of N,N-diethylphenylazothioformamide Ligands with Copper Sources. Eur J Inorg Chem. 2017 Dec 22;2017(47):5576–5581. PMCID: PMC6217847
Book Chapters

This bibliography includes book chapters written by participants in INBRE 3 in Idaho (May 2014 – February 2018).

  • Bryant AE, Stevens DL. 2014. Streptococcus pyogenes, p. 2285–2299. In Principles and Practice of Infectious Diseases8th Edition. Elsevier, Philadelphia, PA.
  • Foster J. 2015. Microbial Diversity, Barcoding approaches. In Encyclopedia of Metagenomics. Springer.
  • Pfau JC, Serve K, Woods L, Noonan CW. 2015. Asbestos Exposure and Autoimmune Disease. Elsevier.
  • Stevens DL, Bryant AE. 2015. Clostridial Toxins in the Pathogenesis of Gas Gangrene. In The Comprehensive Sourcebook of Bacterial Protein Toxins4th Edition. Elsevier, Amsterdam.
  • Jorcyk C, Mikelonas D, Oxford J, Tawara K. 2016. Stüve-Wiedemann syndrome. In Orphanet Encyclopedia of Rare Diseases, ORPHA3206 ed.
  • Nazari A, Farid A, Cornell KA. 2016. Impedance-based water quality monitoring using the parallel plate method, p. 378–392. In Proceedings of the American Society of Civil Engineers, Geo-Chicago 2016.
  • Pu X, Wang Z, Klaunig JE. 2016. Cryopreservation of human blood for alkaline and Fpg-modified comet assay. In Toxicol Mech Methods.
  • Rodnick KJ, Planas JV. 2016. The Stress and Stress Mitigation Effects of Exercise: Cardiovascular, Metabolic, and Skeletal Muscle Adjustments, p. 251–294. In Fish Physiology – Biology of Stress in Fish. Academic Press, San Diego, CA.
  • Stevens DL, Bryant AE. 2016. Impetigo, Erysipelas and Cellulitis. In Streptococcus pyogenes, Basic Biology to Clinical Manifestations.
  • Stevens DL, Bryant AE. 2016. Severe Group A Streptococcal Infections. In Streptococcus pyogenes, Basic Biology to Clinical Manifestations.
  • Vasdekis AE, Stephanopoulos G. 2016. Single Cell Phenotypic Screening in Inverse Metabolic Engineering. In Microfluidic Methods for Molecular Biology. Springer.
  • Oxford JT. 2016. Molecular Genetics of Stüve–Wiedemann Syndrome. In eLS. John Wiley & Sons Ltd, Chichester.
  • Hobdey SE, Stevens DL. 2017. Infections due to Staphylococci. In Infectious Diseases. Scientific American Medicine.
  • Hobdey SE, Stevens DL. 2017. Infections due to Streptococcus Pneumoniae. In Infectious Diseases. Scientific American Medicine.
  • Spradlin S, Cobani L, Brininger C, Evilia C. 2017. Archaea were trailblazers in signaling evolution: Protein adaptation and structural fluidity as a form of intracellular communication. In Biocommunication in Archaea. Springer International Publishing AG.


Reported to INBRE as of December 2017


Aldape, Mike: Merck, Inc,

“Effects of CB-183,315 on the Growth, Sporulation, and Expression and Production of Virulence Factors Associated with Clostridium difficile Infection”

Aubuchon-Endsley, Nicki: Idaho State University

“Career Path Internships”

Aubuchon-Endsley, Nicki: Idaho State University Department of Physical and Occupational Therapy


Aubuchon-Endsley, Nicki: Idaho State University Office of Research

“Faculty Start-up”

Aubuchon-Endsley, Nicki: Idaho State University Psychology Department

“Travel Grant”

Beard, Richard: American Heart Association

“Mechanisms for Oncostatin M Induced TAMP Repression and Barrier Dysfunction in Cerebral Microvascular Endothelium”

Brown, Tyler: Idaho Department of Commerce

“Evaluation of the Ankle Roll Guard’s Effectiveness to Improve its Clinical Benefit”

Brumley, Michele: Burroughs Wellcome Fund

“Effects of Locomotion on Tendon Formation in the Developing Neonate”

Bryant, Amy: Merck, Inc.

“Efficacy of Tedizolid in Experimental Necrotizing Fasciitis/Myonecrosis Caused by Erythromycin/Clindamycin Resistant Group A Streptococci”

Bryant, Amy: Motif Biosciences

“The Effects of Iclaprim on Toxin Gene Expression and Protein Production by Methicillin-sensitive and Methicillin-resistant Staphylococcus aureus

Chase, Jennifer: MJ Murdock Charitable Trust

“Modeling carbohydrate flux in cultured uterine cells”

Cornell, Kenneth: Gem Pharmaceuticals

“Anti-PD-1/GPX-150 and GPX-160 Combination Therapy Studies”

Dadabay, Carolyn: Burroughs Wellcome Fund

“Isolation and Identification of Bioactive Plant Compounds Identified through a Co-evolutionary Screen”

Ferguson, Matt: Research Corporation and Gordon and Betty Moore Foundation

“Scialog: Deconstructing the Cell’s Mechanical Circuits”

Fologea, Daniel: Idaho State Board of Education

“Engineered advancements in measuring molecular interactions in support of local bioindustry”

Forbey, Jennifer: Murdock Charitable Trust

“Wildlife-Directed Bioprospecting of Chemical Diversity for Pest Control”

Hobdey, Sarah: Forest Research Institute, Inc.

“The Effects of Dalbavancin on Toxin Expression and Production by Methicillin-sensitive and Methicillin-resistant Staphylococcus aureus

Johnston, Nancy: Lewis-Clark State College Division of Natural Sciences


Jorcyk, Cheryl: MJ Murdock Charitable Trust

“Investigating prostate tumor cell migration”

Jorcyk, Cheryl: The Smylie Family Cancer Research Fund

“Inflammatory cytokines in tumor invasion and metastasis”

Latta, Leigh: Idaho Higher Education Research Council

“The Effect of Spontaneous Mutation on Neural Function”

Latta, Leigh: Idaho Higher Education Research Council

“The Effects of Spontaneous Mutation on Age-Related Changes in Protein Aggregation”

Latta, Leigh: Lewis-Clark State College


Long, Seth: Idaho Higher Education Research Council

“Student Support”

Martin, Bryn: Alcyone Lifesciences

“An in vitro platform for pharmacokinetic quantification of intrathecal infusion devices”

Martin, Bryn: Minnetronix Corporation

“An Experimental and Computational Platform for Neuropheresis Device Assessment”

Martin, Bryn: University of Idaho

“Hydrodynamic Simulator for Brain Therapeutic Development”

Martin, Bryn: Voyager Therapeutics Corporation

“A subject-specific computational simulator of intrathecal drug dispersion in non-human primates”

Powell, Matt: Smith Bucklin, United Soybean Board

“Evaluation of the Nutritional Value of International Soybean Meal Supplies in Multiple”

Powell, Matt: Smith Bucklin, United Soybean Board

“Exploring the Use of Trimethylamine Oxide as a Feed Additive to Combat Soy-Induced

Powell, Matt: Soy Aquaculture Alliance

“Comparing Selected vs. Non-Selected Rainbow Trout to Elucidate Resistance to Soybean

Meal Caused Distal Enteritis”

Powell, Matt: Western Regional Aquaculture Center

“If you feed them, will they grow? A dietary approach to improving the growth of juvenile cutthroat trout”

Schiele, Nate: Burroughs Wellcome Fund

“Investigating effects of locomotion on tendon formation in developing neonates in vivo

Schiele, Nate: University of Idaho

“Investigating mechanoregulation of stem cells for tendon tissue engineering”

Schiele, Nate: University of Idaho Office of Research and Economic Development

“Small Scale Universal Testing System”

Schiele, Nate: University of Idaho Office of Undergraduate Research

“Enhancing the student experience through integration of novel research projects: Exploring mechanical regulation of stem cells in Tissue Engineering and Regenerative Medicine”

Tinker, Juliette: MJ Murdock Charitable Trust

“Characterization of ArtAB: a novel enterotoxin from Salmonella typhimurium

Warner, Don: Gem Pharmaceuticals

“Synthesis and in vitro potency of GPX-150/GPX-160 analogs”


Browning, Jim: Department of Defense

“Phase Controlled Magnetron Development”

Brown, Tyler: Department of Defense

“Assessing Operational War Fighter Performance with Emerging IMU Technology”

Bryant, Amy: Veterans Administration

“Research Career Scientist Award””

Cornell, Kenneth: Agency for International Development

“Visiting Professorship to University of San Agustin”

Fologea, Daniel: National Aeronautics and Space Administration

“Microgravity Induced Modulation of Ca2+ Transport Mediated by TRPV4 as a Risk Factor for Osteoporosis”

Fologea, Daniel: National Science Foundation

“NSF Career – Single Molecule Characterization & Controlled Transport Using Lysenin Channels”

Forbey, Jennifer: National Science Foundation

“Collaborative Research: Modeling the Tradeoffs of Food-, Fear-, and Thermal-Scapes to Explain Habitat Use by Mammalian”

Forbey, Jennifer: US Department of Interior

“Using Near-Infrared Reflectance Spectroscopy (NIRS) to Quantify Dietary Quality of Sagebrush and Differentiate Species and Subspecies of Sagebrush”

Harris, Jerry: National Aeronautics and Space Administration

“ISGC Collaboration Grant – Travel to NASA Glenn Research Center”

Hayden, Eric: National Aeronautics and Space Administration

“RNA “Sea-Scapes”: Fitness Landscapes with a Changing Environment”

Hayden, Eric: National Science Foundation

“An Empirical Examination of the Evolution of Innovation”

Lee, Jeunghoon: National Science Foundation

“Rapid Colorimetric Detection of Biomarkers via Catalytic Disassembly of Gold Nanoparticle Aggregates”

Lujan, Trevor: National Science Foundation

“CAREER: Characterization and Simulation of Failure Mechanisms in Soft Fibrous Tissue”

Magolan, Jakob: National Science Foundation

“SusChEM: Efficient Synthesis Using Heterogeneous Tools”

Martin, Bryn: National Aeronautics and Space Administration

“Advanced Ocular and Brain MRI of Astronauts Following Long Duration Space Flight”

Martin, Bryn: National Aeronautics and Space Administration

“Idaho Space Grant Consortium Graduate Student Fellowship”

Martin, Bryn: National Aeronautics and Space Administration

“Idaho Space Grant Consortium Undergraduate Student Fellowship”

Martin, Bryn: National Aeronautics and Space Administration

“Simulations of CSF, Hemodynamics and Ocular Risk (VIIP SCHOLAR)”

Marx, Chris: Department of Defense

“Associating growth conditions with cellular composition in Gram-negative bacteria”

Marx, Chris: Department of Energy

“A high-throughput pipeline for mapping inter-species interactions and metabolic synergy relevant to next-generation biofuel production”

Marx, Chris: National Science Foundation BEACON

“It only gets worse from here: adaptation in the face of ever-larger pulses of stress”

Marx, Chris: National Science Foundation BEACON

“Off the deep end of the gene pool: deep-sequencing and metabolomics analysis as a framework for uncovering fitness landscapes and modeling evolvability in engineered metabolic networks”

Marx, Chris: National Science Foundation BEACON

“What does the flux say: Empirical validation of flux balance analysis”

Marx, Chris: National Science Foundation

“Collaborative Research: Deep-sequencing analysis of edited metabolic pathways to uncover, model, and overcome epistatic constraints upon optimization”

McGowan, Craig: Department of Defense

“Tuning of Musculoskeletal Mechanical Properties for Bipedal Hopping: Biological Mechanisms for Either Efficiency versus Power”

McGowan, Craig: Department of Defense

“CAREER: Establishing links between musculoskeletal morphology and the biomechanics of bipedal hopping in desert environments”

Moberly, James: National Science Foundation

“EAGER: Rapid Screening and Identification of Organisms which Hyper-Accumulate Metals”

Oxford, Julie: National Aeronautics and Space Administration

“Role of Cellular Connectivity in Maintaining Osteogenesis under Simulated Microgravity in Response to Mechanical Challenges”

Oxford, Julie: National Science Foundation

“Gateway Scholarships for Biological Sciences”

Stenkamp, Deborah: National Science Foundation

“Collaborative Research: Diversification of Sensory Systems in Novel Habitat: Enhanced Vision or Compensation in Other Modalities?

Tinker, Juliette: US Department of Agriculture

“Novel vaccines to prevent bovine mastitis caused by Staphylococcus aureus and Streptococcus uberis

Warner, Lisa: National Science Foundation

“RII Track-4: Using in-cell NMR to follow 13C-fluxomics in living cells”

Ytreberg, F Marty: National Science Foundation

“RII Track-2 FEC: Using biophysical protein models to map genetic variation to phenotypes”


Ammons, Mary Cloud: National Institutes of Health, NIGMS

“Metabolomic Analysis as a Tool to Understanding the Use of Novel Therapeutics in a Host-Pathogen Model of the Chronic Wound Environments”

Bond, Laura: National Institutes of Health, NIGMS

“Subaward: Clinical and Translational Research Infrastructure Network IDeA-CTR”

Cornell, Kenneth: National Institutes of Health, NIGMS

“Development of Novel Antibiotics to Treat Protozoan Parasites”

Ferguson, Matt: National Institutes of Health, NIGMS

“Spatiotemporal Dynamics of Transcription and Splicing by Two Photon 3D Orbital Tracking”

Fitzpatrick, Clare: National Institutes of Health, NIGMS

“Subaward: Optimizing surgical treatment of crouch gait on a patient-specific basis”

Groome, James: National Institutes of Health, NINDS

“Determinants of Sodium Channel Function: Ion Pair Interactions across Domains

Jorcyk, Cheryl: National Institutes of Health, NIGMS

“The Southwest Idaho Bridges to the Baccalaureate”

Martin, Bryn: National Institutes of Health, NIGMS

“Subaward: MRI-based Biomarkers for Amyotrophic Lateral Sclerosis”

Morrison, Brad: National Institutes of Health, NINDS

“Autophagy dysfunction in Parkinson’s Disease by VPS35 D620N”

Morrison, Brad: National Institutes of Health, NINDS

“Supplement to R15 “Autophagy dysfunction in Parkinson’s disease by VPS35 D620N”

Nagarajan, Rajesh: National Institutes of Health, NIGMS

“Acyl-homoserine lactone signal fidelity enforcing mechanism in bacterial communication”

Oxford, Julie: National Institutes of Health, NIGMS

“Supplement: COBRE in Matrix Biology”

Oxford, Julie: National Institutes of Health, NIGMS

“COBRE in Matrix Biology”

Peng, Ching-An: National Institutes of Health, NCI

“Engineering Viruses for Cancer Therapy”

Pilarski, Jason: National Institutes of Health, NINDS

“Mechanisms of respiratory-related rhythmic motor activity and plasticity in the avian brain stem”

Stenkamp, Deborah: National Institutes of Health, NEI

“Patterning Genes in Retinal Development”

Stenkamp, Deborah: National Institutes of Health, NEI

“Ocular Vasculature and Retinal Neurogenesis”

Stenkamp, Deborah: National Institutes of Health, NEI

“Synapses in Regenerated Retina”

Stevens, Dennis: National Institutes of Health, NIGMS

“Idaho Biomedical Research Collaborative in Emerging/Re-emerging Infectious Disease”

Warner, Lisa: National Institutes of Health, NHLBI

“Subaward: Using fortilin inhibitors to block atherosclerosis”

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