Journal Articles (2018)

This bibliography includes journal articles by all participants in INBRE 3 in Idaho (2018).

  • Swann HE, Brumley MR. Locomotion and posture development in immature male and female rats (Rattus norvegicus): Comparison of sensory-enriched versus sensory-deprived testing environments. J Comp Psychol. 2018 Nov 1; PMID: 30382711
  • Sane MS, Misra N, Mousa OM, Czop S, Tang H, Khoo LT, Jones CD, Mustafi SB. Cytokines in umbilical cord blood-derived cellular product: a mechanistic insight into bone repair. Regen Med. 2018 Oct 22; PMID: 30346891
  • LaFoya B, Munroe JA, Pu X, Albig AR. Src kinase phosphorylates Notch1 to inhibit MAML binding. Sci Rep. 2018 Oct 19;8(1):15515. PMCID: PMC6195628
  • Gunderson MP, Nguyen BT, Cervantes Reyes JC, Holden LL, French JMT, Smith BD, Lineberger C. Response of phase I and II detoxification enzymes, glutathione, metallothionein and acetylcholine esterase to mercury and dimethoate in signal crayfish (Pacifastacus leniusculus). Chemosphere. 2018 Oct;208:749–756. PMCID: PMC6074053
  • Boursier ME, Moore JD, Heitman KM, Shepardson-Fungairino SP, Combs JB, Koenig LC, Shin D, Brown EC, Nagarajan R, Blackwell HE. Structure-Function Analyses of the N-Butanoyl l-Homoserine Lactone Quorum-Sensing Signal Define Features Critical to Activity in RhlR. ACS Chem Biol. 2018 Sep 21;13(9):2655–2662. PMCID: PMC6200399
  • Strong AD, Indart MC, Hill NR, Daniels RL. GL261 glioma tumor cells respond to ATP with an intracellular calcium rise and glutamate release. Mol Cell Biochem. 2018 Sep;446(1–2):53–62. PMCID: PMC6037622
  • DePompeo CM, Bond L, George YE, Mezzles MJ, Brourman JD, Chandler JC, Murphy SM, Pike F, Mason DR. Intra-abdominal complications following intestinal anastomoses by suture and staple techniques in dogs. J Am Vet Med Assoc. 2018 Aug 15;253(4):437–443. PMID: 30058972
  • Nhu Lam M, Dudekula D, Durham B, Collingwood N, Brown EC, Nagarajan R. Insights into β-ketoacyl-chain recognition for β-ketoacyl-ACP utilizing AHL synthases. Chem Commun (Camb). 2018 Aug 7;54(64):8838–8841. PMID: 30027952
  • Lawrence BJ, Luciano M, Tew J, Ellenbogen RG, Oshinski JN, Loth F, Culley AP, Martin BA. Cardiac-Related Spinal Cord Tissue Motion at the Foramen Magnum is Increased in Patients with Type I Chiari Malformation and Decreases Postdecompression Surgery. World Neurosurg. 2018 Aug;116:e298–e307. PMCID: PMC6063776
  • Bayless-Edwards L, Winston V, Lehmann-Horn F, Arinze P, Groome JR, Jurkat-Rott K. NaV1.4 DI-S4 periodic paralysis mutation R222W enhances inactivation and promotes leak current to attenuate action potentials and depolarize muscle fibers. Sci Rep. 2018 Jul 10;8(1):10372. PMCID: PMC6039468
  • Culbertson VL, Rahman SE, Bosen GC, Caylor ML, Echevarria MM, Xu D. Implications of Off-Target Serotoninergic Drug Activity: An Analysis of Serotonin Syndrome Reports Using a Systematic Bioinformatics Approach. Pharmacotherapy. 2018 Jul 4; PMID: 29972695
  • Thyagaraj S, Pahlavian SH, Sass LR, Loth F, Vatani M, Choi J-W, Tubbs RS, Giese D, Kroger J-R, Bunck AC, Martin BA, Thyagaraj S, Pahlavian SH, Sass LR, Loth F, Vatani M, Jae-Won Choi null, Tubbs RS, Giese D, Kroger J-R, Bunck AC, Martin BA, Vatani M, Martin BA, Choi J-W, Loth F, Bunck AC, Kroger J-R, Pahlavian SH, Sass LR, Tubbs RS, Thyagaraj S, Giese D. An MRI-Compatible Hydrodynamic Simulator of Cerebrospinal Fluid Motion in the Cervical Spine. IEEE Trans Biomed Eng. 2018 Jul;65(7):1516–1523. PMCID: PMC6025821
  • Misra N, Pu X, Holt DN, McGuire MA, Tinker JK. Immunoproteomics to identify Staphylococcus aureus antigens expressed in bovine milk during mastitis. J Dairy Sci. 2018 Jul;101(7):6296–6309. PMID: 29729920
  • Duan M, Hunter SS, Minnich SA, Fagnan MW, New DD, Hovde CJ, Sheng H. Complete Genome Sequence of Broad-Host-Range Shiga Toxin-Converting Bacteriophage SH2026Stx1, Isolated from Escherichia coli O157:H7. Genome Announc. 2018 Jun 21;6(25). PMCID: PMC6013618
  • Tawara K, Bolin C, Koncinsky J, Kadaba S, Covert H, Sutherland C, Bond L, Kronz J, Garbow JR, Jorcyk CL. OSM potentiates preintravasation events, increases CTC counts, and promotes breast cancer metastasis to the lung. Breast Cancer Res. 2018 Jun 14;20(1):53. PMCID: PMC6001163
  • Frahs SM, Oxford JT, Neumann EE, Brown RJ, Keller-Peck CR, Pu X, Lujan TJ. Extracellular Matrix Expression and Production in Fibroblast-Collagen Gels: Towards an In Vitro Model for Ligament Wound Healing. Ann Biomed Eng. 2018 Jun 5; PMID: 29873012
  • Bowman RM, Schmidt S, Weeks C, Clark H, Brown C, Latta LC, Edgehouse M. Phenotypic plasticity in a population of odonates. Sci Rep. 2018 May 31;8(1):8442. PMCID: PMC5981427
  • Mitchell DM, Lovel AG, Stenkamp DL. Dynamic changes in microglial and macrophage characteristics during degeneration and regeneration of the zebrafish retina. J Neuroinflammation. 2018 May 28;15(1):163. PMCID: PMC5971432
  • Robertson JC, Jorcyk CL, Oxford JT. DICER1 Syndrome: DICER1 Mutations in Rare Cancers. Cancers (Basel). 2018 May 15;10(5). PMCID: PMC5977116
  • King MD, Long T, Pfalmer DL, Andersen TL, McDougal OM. SPIDR: small-molecule peptide-influenced drug repurposing. BMC Bioinformatics. 2018 Apr 16;19(1):138. PMCID: PMC5902895
  • Stender CJ, Rust E, Martin PT, Neumann EE, Brown RJ, Lujan TJ. Modeling the effect of collagen fibril alignment on ligament mechanical behavior. Biomech Model Mechanobiol. 2018 Apr;17(2):543–557. PMCID: PMC5880545
  • Anwar M, Turner M, Farrell N, Zomlefer WB, McDougal OM, Morgan BW. Hikers poisoned: Veratrum steroidal alkaloid toxicity following ingestion of foraged Veratrum parviflorum. Clin Toxicol (Phila). 2018 Feb 28;1–5. PMID: 29490507
  • LaFoya B, Munroe JA, Miyamoto A, Detweiler MA, Crow JJ, Gazdik T, Albig AR. Beyond the Matrix: The Many Non-ECM Ligands for Integrins. Int J Mol Sci. 2018 Feb 2;19(2). PMCID: PMC5855671
  • Anders CB, Eixenberger JE, Franco NA, Hermann RJ, Rainey KD, Chess JJ, Punnoose A, Wingett DG. ZnO nanoparticle preparation route influences surface reactivity, dissolution and cytotoxicity. Environ Sci Nano. 2018 Feb 1;5(2):572–588. PMCID: PMC5823520
  • Ruffley M, Smith ML, Espíndola A, Carstens BC, Sullivan J, Tank DC. Combining allele frequency and tree-based approaches improves phylogeographic inference from natural history collections. Mol Ecol. 2018 Feb;27(4):1012–1024. PMCID: PMC5878120
  • McGinn TE, Mitchell DM, Meighan PC, Partington N, Leoni DC, Jenkins CE, Varnum MD, Stenkamp DL. Restoration of Dendritic Complexity, Functional Connectivity, and Diversity of Regenerated Retinal Bipolar Neurons in Adult Zebrafish. J Neurosci. 2018 Jan 3;38(1):120–136. PMCID: PMC5761431
  • Eberle S, Dezoumbe D, McGregor R, Kinzer S, Raver W, Schaack S, Latta LC. Hierarchical Assessment of Mutation Properties in Daphnia magna. G3 (Bethesda). 2018 06;8(11):3481–3487. PMCID: PMC6222573
  • Misra N, Wines TF, Knopp CL, Hermann R, Bond L, Mitchell B, McGuire MA, Tinker JK. Immunogenicity of a Staphylococcus aureus-cholera toxin A2/B vaccine for bovine mastitis. Vaccine. 2018 07;36(24):3513–3521. PMCID: PMC6014625
  • Addo-Quaye C, Tuinstra M, Carraro N, Weil C, Dilkes BP. Whole-Genome Sequence Accuracy Is Improved by Replication in a Population of Mutagenized Sorghum. G3 (Bethesda). 2018 02;8(3):1079–1094. PMCID: PMC5844295
  • Sun C, Galicia C, Stenkamp DL. Transcripts within rod photoreceptors of the Zebrafish retina. BMC Genomics. 2018 08;19(1):127. PMCID: PMC5806438
  • Damase TR, Miura TA, Parent CE, Allen PB. Application of the Open qPCR Instrument for the in Vitro Selection of DNA Aptamers against Epidermal Growth Factor Receptor and Drosophila C Virus. ACS Comb Sci. 2018 12;20(2):45–54. PMID: 29293309
  • Rohn TT, Mack JM. Apolipoprotein E Fragmentation within Lewy Bodies of the Human Parkinson’s Disease Brain. Int J Neurodegener Dis. 2018;1(1). PMCID: PMC6159338
  • Raveling AR, Theodossiou SK, Schiele NR. A 3D printed mechanical bioreactor for investigating mechanobiology and soft tissue mechanics. MethodsX. 2018;5:924–932. PMCID: PMC6111048
  • Johnson NA, Wolfe SR, Kabir H, Andrade GA, Yap GPA, Heiden ZM, Moberly JG, Roll MF, Waynant KV. Deconvoluting the Innocent vs. Non-innocent Behavior of N,N-diethylphenylazothioformamide Ligands with Copper Sources. Eur J Inorg Chem. 2017 Dec 22;2017(47):5576–5581. PMCID: PMC6217847
Journal Articles (2014-2017)

This bibliography includes journal articles by all participants in INBRE 3 in Idaho (2014 – 2017).

  • Christensen QH, Brecht RM, Dudekula D, Greenberg EP, Nagarajan R. 2014. Evolution of acyl-substrate recognition by a family of acyl-homoserine lactone synthases. PLoS ONE 9:e112464.
  • Fortunato EA. 2014. Use of diploid human fibroblasts as a model system to culture, grow, and study human cytomegalovirus infection. Methods Mol Biol 1119:47–57.
  • Groome JR, Jurkat-Rott K, Lehmann-Horn F. 2014. Domain III S4 in closed-state fast inactivation: insights from a periodic paralysis mutation. Channels (Austin) 8:467–471.
  • Hughes AN, Oxford JT. 2014. A lipid-rich gestational diet predisposes offspring to nonalcoholic fatty liver disease: a potential sequence of events. Hepat Med 6:15–23.
  • Hurt RA, Robeson MS, Shakya M, Moberly JG, Vishnivetskaya TA, Gu B, Elias DA. 2014. Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments. PLoS ONE 9:e102826.
  • Li X, Top EM, Wang Y, Brown CJ, Yao F, Yang S, Jiang Y, Li H. 2014. The broad-host-range plasmid pSFA231 isolated from petroleum-contaminated sediment represents a new member of the PromA plasmid family. Front Microbiol 5:777.
  • Pfau JC, Serve KM, Noonan CW. 2014. Autoimmunity and asbestos exposure. Autoimmune Dis 2014:782045.
  • Strain MM, Kauer SD, Kao T, Brumley MR. 2014. Inter- and intralimb adaptations to a sensory perturbation during activation of the serotonin system after a low spinal cord transection in neonatal rats. Front Neural Circuits 8:80.
  • Altieri N, Townsend JT, Wenger MJ. 2014. A measure for assessing the effects of audiovisual speech integration. Behav Res Methods 46:406–415.
  • Kumar P, Baral B, Anderson BA, Guenther DC, Østergaard ME, Sharma PK, Hrdlicka PJ. 2014. C5-alkynyl-functionalized α-L-LNA: synthesis, thermal denaturation experiments and enzymatic stability. J Org Chem 79:5062–5073.
  • Kumar P, Østergaard ME, Baral B, Anderson BA, Guenther DC, Kaura M, Raible DJ, Sharma PK, Hrdlicka PJ. 2014. Synthesis and biophysical properties of C5-functionalized LNA (locked nucleic acid). J Org Chem 79:5047–5061.
  • Kaura M, Guenther DC, Hrdlicka PJ. 2014. Carbohydrate-functionalized locked nucleic acids: oligonucleotides with extraordinary binding affinity, target specificity, and enzymatic stability. Org Lett 16:3308–3311.
  • Baker YS, Agrawal R, Foster JA, Beck D, Dozier G. 2014. APPLYING MACHINE LEARNING TECHNIQUES IN DETECTING BACTERIAL VAGINOSIS. Proc Int Conf Mach Learn Cybern 2014:241–246.
  • Kaura M, Kumar P, Hrdlicka PJ. 2014. Synthesis, hybridization characteristics, and fluorescence properties of oligonucleotides modified with nucleobase-functionalized locked nucleic acid adenosine and cytidine monomers. J Org Chem 79:6256–6268.
  • Din S, Konstandin MH, Johnson B, Emathinger J, Völkers M, Toko H, Collins B, Ormachea L, Samse K, Kubli DA, De La Torre A, Kraft AS, Gustafsson AB, Kelly DP, Sussman MA. 2014. Metabolic dysfunction consistent with premature aging results from deletion of Pim kinases. Circ Res 115:376–387.
  • Mellor LF, Baker TL, Brown RJ, Catlin LW, Oxford JT. 2014. Optimal 3D culture of primary articular chondrocytes for use in the rotating wall vessel bioreactor. Aviat Space Environ Med 85:798–804.
  • Rodnick KJ, Gamperl AK, Nash GW, Syme DA. 2014. Temperature and sex dependent effects on cardiac mitochondrial metabolism in Atlantic cod (Gadus morhua L.). J Therm Biol 44:110–118.
  • de Andrade GB, Long SS, Fleming H, Li W, Fuerst PG. 2014. DSCAM localization and function at the mouse cone synapse. J Comp Neurol 522:2609–2633.
  • Guenther DC, Kumar P, Anderson BA, Hrdlicka PJ. 2014. C5-amino acid functionalized LNA: positively poised for antisense applications. Chem Commun (Camb) 50:9007–9009.
  • Thompson MA, Gutmann A, Seegmiller J, McGowan CP. 2014. The effect of stride length on the dynamics of barefoot and shod running. J Biomech 47:2745–2750.
  • Kengne B-AF, Karmakar S, Kaura M, Sai VVR, Corti G, Niraula IB, Larin A, Hall J, Sowell D, Hrdlicka PJ, Dobrokhotov V, McIlroy DN. 2014. Self-assembled monolayers of thiols adsorbed on Au/ZnO-functionalized silica nanosprings: photoelectron spectroscopy-analysis and detection of vaporized explosives. ACS Appl Mater Interfaces 6:13355–13366.
  • Chandler CM, McDougal OM. 2014. Medicinal history of North American Veratrum. Phytochem Rev 13:671–694.
  • Ferro A, Zebedeo CN, Davis C, Ng KW, Pfau JC. 2014. Amphibole, but not chrysotile, asbestos induces anti-nuclear autoantibodies and IL-17 in C57BL/6 mice. J Immunotoxicol 11:283–290.
  • Nuhn JS, Fuerst PG. 2014. Developmental localization of adhesion and scaffolding proteins at the cone synapse. Gene Expr Patterns 16:36–50.
  • Sherpa T, Lankford T, McGinn TE, Hunter SS, Frey RA, Sun C, Ryan M, Robison BD, Stenkamp DL. 2014. Retinal regeneration is facilitated by the presence of surviving neurons. Dev Neurobiol 74:851–876.
  • Jacobs JC, Shea KG, Oxford JT, Carey JL. 2014. Fluoroquinolone use in a child associated with development of osteochondritis dissecans. BMJ Case Rep 2014.
  • Jones-Mensah E, Magolan J. 2014. Aryl methyl sulfides via SNAr using DMSO as the source of the thiomethyl moiety. Tetrahedron Letters 55:5323–5326.
  • Altieri N, Hudock D. 2014. Assessing variability in audiovisual speech integration skills using capacity and accuracy measures. Int J Audiol 53:710–718.
  • Letzring TD, Human LJ. 2014. An examination of information quality as a moderator of accurate personality judgment. J Pers 82:440–451.
  • Yang L, Chiu SC, Liao W-K, Thomas MA. 2014. High Performance Data Clustering: A Comparative Analysis of Performance for GPU, RASC, MPI, and OpenMP Implementations. J Supercomput 70:284–300.
  • Bezzerides AL, Loofbourrow SA. 2014. Melanic Facial Patterns and their Significance in the Multicolored Asian Lady Beetle (Harmonia axyridis). Am Midl Nat 172:366–371.
  • Montebello AN, Brecht RM, Turner RD, Ghali M, Pu X, Nagarajan R. 2014. Acyl-ACP substrate recognition in Burkholderia mallei BmaI1 acyl-homoserine lactone synthase. Biochemistry 53:6231–6242.
  • Edgehouse M, Brown CP. 2014. Predatory luring behavior of odonates. J Insect Sci 14:146.
  • Karmakar S, Madsen AS, Guenther DC, Gibbons BC, Hrdlicka PJ. 2014. Recognition of double-stranded DNA using energetically activated duplexes with interstrand zippers of 1-, 2- or 4-pyrenyl-functionalized O2’-alkylated RNA monomers. Org Biomol Chem 12:7758–7773.
  • Belnap SC, Allmond JT, Boomhower SR, Roberto ME, Brumley MR. 2014. Sensorimotor training during expression of the leg extension response (LER) in 1-day-old rats. Dev Psychobiol 56:1553–1563.
  • Stevenson RA, Ghose D, Fister JK, Sarko DK, Altieri NA, Nidiffer AR, Kurela LR, Siemann JK, James TW, Wallace MT. 2014. Identifying and quantifying multisensory integration: a tutorial review. Brain Topogr 27:707–730.
  • Strain MM, Brumley MR. 2014. Range of motion (ROM) restriction influences quipazine-induced stepping behavior in postnatal day one and day ten rats. Behav Brain Res 274:365–381.
  • Battiprolu PK, Rodnick KJ. 2014. Dichloroacetate selectively improves cardiac function and metabolism in female and male rainbow trout. Am J Physiol Heart Circ Physiol 307:H1401-1411.
  • Hickey RJ, Forney LJ. 2014. Gardnerella vaginalis does not always cause bacterial vaginosis. J Infect Dis 210:1682–1683.
  • Takabayashi S, Klein WP, Onodera C, Rapp B, Flores-Estrada J, Lindau E, Snowball L, Sam JT, Padilla JE, Lee J, Knowlton WB, Graugnard E, Yurke B, Kuang W, Hughes WL. 2014. High precision and high yield fabrication of dense nanoparticle arrays onto DNA origami at statistically independent binding sites. Nanoscale 6:13928–13938.
  • Boomhower SR, Rasmussen EB. 2014. Haloperidol and rimonabant increase delay discounting in rats fed high-fat and standard-chow diets. Behav Pharmacol 25:705–716.
  • Jayaram A, Witkin SS, Zhou X, Brown CJ, Rey GE, Linhares IM, Ledger WJ, Forney LJ. 2014. The bacterial microbiome in paired vaginal and vestibular samples from women with vulvar vestibulitis syndrome. Pathog Dis 72:161–166.
  • Lee DV, Isaacs MR, Higgins TE, Biewener AA, McGowan CP. 2014. Scaling of the spring in the leg during bouncing gaits of mammals. Integr Comp Biol 54:1099–1108.
  • Murdock M, Holman RW, Slade T, Clark SLD, Rodnick KJ. 2014. An Introductory Organic Chemistry Review Homework Exercise: Deriving Potential Mechanisms for Glucose Ring Opening in Mutarotation. J Chem Educ 91:2146–2147.
  • Beck D, Foster JA. 2015. Machine learning classifiers provide insight into the relationship between microbial communities and bacterial vaginosis. BioData Min 8:23.
  • Chikh-Ali M, Karasev AV. 2015. Immunocapture-Multiplex RT-PCR for the Simultaneous Detection and Identification of Plant Viruses and Their Strains: Study Case, Potato Virus Y (PVY). Methods Mol Biol 1302:177–186.
  • Cresawn SG, Pope WH, Jacobs-Sera D, Bowman CA, Russell DA, Dedrick RM, Adair T, Anders KR, Ball S, Bollivar D, Breitenberger C, Burnett SH, Butela K, Byrnes D, Carzo S, Cornely KA, Cross T, Daniels RL, Dunbar D, Findley AM, Gissendanner CR, Golebiewska UP, Hartzog GA, Hatherill JR, Hughes LE, Jalloh CS, De Los Santos C, Ekanem K, Khambule SL, King RA, King-Smith C, Klyczek K, Krukonis GP, Laing C, Lapin JS, Lopez AJ, Mkhwanazi SM, Molloy SD, Moran D, Munsamy V, Pacey E, Plymale R, Poxleitner M, Reyna N, Schildbach JF, Stukey J, Taylor SE, Ware VC, Wellmann AL, Westholm D, Wodarski D, Zajko M, Zikalala TS, Hendrix RW, Hatfull GF. 2015. Comparative genomics of Cluster O mycobacteriophages. PLoS ONE 10:e0118725.
  • Damase TR, Stephens D, Spencer A, Allen PB. 2015. Open source and DIY hardware for DNA nanotechnology labs. J Biol Methods 2:e24.
  • Day RJ, Mason MJ, Thomas C, Poon WW, Rohn TT. 2015. Caspase-Cleaved Tau Co-Localizes with Early Tangle Markers in the Human Vascular Dementia Brain. PLoS ONE 10:e0132637.
  • Eakle WL, Bond L, Fuller MR, Fischer RA, Steenhof K. 2015. Wintering Bald Eagle Count Trends in the Conterminous United States, 1986-2010. J Raptor Res 49:259–268.
  • Goyden J, Tawara K, Hedeen D, Willey JS, Oxford JT, Jorcyk CL. 2015. The Effect of OSM on MC3T3-E1 Osteoblastic Cells in Simulated Microgravity with Radiation. PLoS ONE 10:e0127230.
  • Hafez A, Squires R, Pedracini A, Joshi A, Seegmiller RE, Oxford JT. 2015. Col11a1 Regulates Bone Microarchitecture during Embryonic Development. J Dev Biol 3:158–176.
  • Hennig J, Warner LR, Simon B, Geerlof A, Mackereth CD, Sattler M. 2015. Structural Analysis of Protein-RNA Complexes in Solution Using NMR Paramagnetic Relaxation Enhancements. Meth Enzymol 558:333–362.
  • Kirol CP, Sutphin AL, Bond L, Fuller MR, Maechtle TL. 2015. Mitigation effectiveness for improving nesting success of greater sage-grouse influenced by energy development. Wildlife Biol 21:98–109.
  • Martorelli L, Hovde CJ, Vilte DA, Albanese A, Zotta E, Ibarra C, Cantet RJC, Mercado EC, Cataldi A. 2015. Impact of Infection Dose and Previous Serum Antibodies against the Locus of Enterocyte Effacement Proteins on Escherichia coli O157:H7 Shedding in Calves following Experimental Infection. Biomed Res Int 2015:290679.
  • Pandey R, Botros MA, Nacev BA, Albig AR. 2015. Cyclosporin a disrupts notch signaling and vascular lumen maintenance. PLoS ONE 10:e0119279.
  • Pu X, Oxford JT. 2015. Proteomic Analysis of Engineered Cartilage. Methods Mol Biol 1340:263–278.
  • Stenkamp DL. 2015. Development of the Vertebrate Eye and Retina. Prog Mol Biol Transl Sci 134:397–414.
  • Aldape MJ, Heeney DD, Bryant AE, Stevens DL. 2015. Tigecycline suppresses toxin A and B production and sporulation in Clostridium difficile. J Antimicrob Chemother 70:153–159.
  • Hu H, Banerjee S, Estrada D, Bashir R, King WP. 2015. Tip-Based Nanofabrication of Arbitrary Shapes of Graphene Nanoribbons for Device Applications. RSC Adv 5:37006–37012.
  • Preece EP, Moore BC, Hardy FJ, Deobald LA. 2015. First detection of microcystin in Puget Sound, Washington, mussels (Mytilus trossulus). Lake and Reservoir Management 31:50–54.
  • Bolz DD, Li Z, McIndoo ER, Tweten RK, Bryant AE, Stevens DL. 2015. Cardiac myocyte dysfunction induced by streptolysin O is membrane pore and calcium dependent. Shock 43:178–184.
  • Liu T, Singh R, Rios Z, Bhushan A, Li M, Sheridan PP, Bearden SE, Lai JCK, Agbenowu S, Cao S, Daniels CK. 2015. Tyrosine phosphorylation of HSC70 and its interaction with RFC mediates methotrexate resistance in murine L1210 leukemia cells. Cancer Lett 357:231–241.
  • Sam Ma Z, Guan Q, Ye C, Zhang C, Foster JA, Forney LJ. 2015. Network analysis suggests a potentially “evil” alliance of opportunistic pathogens inhibited by a cooperative network in human milk bacterial communities. Sci Rep 5:8275.
  • Beck D, Dennis C, Foster JA. 2015. Seed: a user-friendly tool for exploring and visualizing microbial community data. Bioinformatics 31:602–603.
  • Remien CH. 2015. Modeling the dynamics of stable isotope tissue-diet enrichment. J Theor Biol 367:14–20.
  • Liang S, Gliniewicz K, Mendes-Soares H, Settles ML, Forney LJ, Coats ER, McDonald AG. 2015. Comparative analysis of microbial community of novel lactic acid fermentation inoculated with different undefined mixed cultures. Bioresour Technol 179:268–274.
  • Ryan RE, Martin B, Mellor L, Jacob RB, Tawara K, McDougal OM, Oxford JT, Jorcyk CL. 2015. Oncostatin M binds to extracellular matrix in a bioactive conformation: implications for inflammation and metastasis. Cytokine 72:71–85.
  • Letzring TD, Adamcik LA. 2015. Personality traits and affective states: Relationships with and without affect induction. Personality and Individual Differences 75:114–120.
  • Cannon BL, Kellis DL, Davis PH, Lee J, Kuang W, Hughes WL, Graugnard E, Yurke B, Knowlton WB. 2015. Excitonic AND Logic Gates on DNA Brick Nanobreadboards. ACS Photonics 2:398–404.
  • Grate JW, Mo K-F, Shin Y, Vasdekis A, Warner MG, Kelly RT, Orr G, Hu D, Dehoff KJ, Brockman FJ, Wilkins MJ. 2015. Alexa fluor-labeled fluorescent cellulose nanocrystals for bioimaging solid cellulose in spatially structured microenvironments. Bioconjug Chem 26:593–601.
  • Loftie-Eaton W, Suzuki H, Bashford K, Heuer H, Stragier P, De Vos P, Settles ML, Top EM. 2015. Draft Genome Sequence of Pseudomonas sp. nov. H2. Genome Announc 3.
  • Karki M, Magolan J. 2015. Bromination of olefins with HBr and DMSO. J Org Chem 80:3701–3707.
  • Li S, Sukeena JM, Simmons AB, Hansen EJ, Nuhn RE, Samuels IS, Fuerst PG. 2015. DSCAM promotes refinement in the mouse retina through cell death and restriction of exploring dendrites. J Neurosci 35:5640–5654.
  • Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF, Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science, Phage Hunters Integrating Research and Education, Mycobacterial Genetics Course. 2015. Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity. Elife 4:e06416.
  • Brumley MR, Kauer SD, Swann HE. 2015. Developmental plasticity of coordinated action patterns in the perinatal rat. Dev Psychobiol 57:409–420.
  • Kohl KD, Pitman E, Robb BC, Connelly JW, Dearing MD, Forbey JS. 2015. Monoterpenes as inhibitors of digestive enzymes and counter-adaptations in a specialist avian herbivore. J Comp Physiol B, Biochem Syst Environ Physiol 185:425–434.
  • Pu X, Lam L, Gehlken K, Ulappa AC, Rachlow JL, Forbey JS. 2015. ANTIOXIDANT CAPACITY OF WYOMING BIG SAGEBRUSH (ARTEMISIA TRIDENTATA SSP. WYOMINGENSIS) VARIES SPATIALLY AND IS NOT RELATED TO THE PRESENCE OF A SAGEBRUSH DIETARY SPECIALIST. West N Am Nat 75:78–87.
  • Samse K, Emathinger J, Hariharan N, Quijada P, Ilves K, Völkers M, Ormachea L, De La Torre A, Orogo AM, Alvarez R, Din S, Mohsin S, Monsanto M, Fischer KM, Dembitsky WP, Gustafsson ÅB, Sussman MA. 2015. Functional Effect of Pim1 Depends upon Intracellular Localization in Human Cardiac Progenitor Cells. J Biol Chem 290:13935–13947.
  • Bryant AE, Bayer CR, Aldape MJ, Stevens DL. 2015. The roles of injury and nonsteroidal anti-inflammatory drugs in the development and outcomes of severe group A streptococcal soft tissue infections. Curr Opin Infect Dis 28:231–239.
  • Kudva IT, Krastins B, Torres AG, Griffin RW, Sheng H, Sarracino DA, Hovde CJ, Calderwood SB, John M. 2015. The Escherichia coli O157:H7 cattle immunoproteome includes outer membrane protein A (OmpA), a modulator of adherence to bovine rectoanal junction squamous epithelial (RSE) cells. Proteomics 15:1829–1842.
  • Mendes-Soares H, Krishnan V, Settles ML, Ravel J, Brown CJ, Forney LJ. 2015. Fine-scale analysis of 16S rRNA sequences reveals a high level of taxonomic diversity among vaginal Atopobium spp. Pathog Dis 73.
  • Zhan YA, Ytreberg FM. 2015. The cis conformation of proline leads to weaker binding of a p53 peptide to MDM2 compared to trans. Arch Biochem Biophys 575:22–29.
  • Zhbannikov IY, Foster JA. 2015. MetAmp: combining amplicon data from multiple markers for OTU analysis. Bioinformatics 31:1830–1832.
  • Anderson BA, Onley JJ, Hrdlicka PJ. 2015. Recognition of Double-Stranded DNA Using Energetically Activated Duplexes Modified with N2’-Pyrene-, Perylene-, or Coronene-Functionalized 2’-N-Methyl-2’-amino-DNA Monomers. J Org Chem 80:5395–5406.
  • Goltry S, Hallstrom N, Clark T, Kuang W, Lee J, Jorcyk C, Knowlton WB, Yurke B, Hughes WL, Graugnard E. 2015. DNA topology influences molecular machine lifetime in human serum. Nanoscale 7:10382–10390.
  • Chikh-Ali M, Alruwaili H, Vander Pol D, Karasev AV. 2015. Molecular Characterization of Recombinant Strains of Potato virus Y From Saudi Arabia. Plant Disease 100:292–297.
  • Long T, McDougal OM, Andersen T. 2015. GAMPMS: Genetic algorithm managed peptide mutant screening. J Comput Chem 36:1304–1310.
  • Kaura M, Hrdlicka PJ. 2015. Locked nucleic acid (LNA) induced effect on the hybridization and fluorescence properties of oligodeoxyribonucleotides modified with nucleobase-functionalized DNA monomers. Org Biomol Chem 13:7236–7247.
  • Xiao Y, Warner LR, Latham MP, Ahn NG, Pardi A. 2015. Structure-Based Assignment of Ile, Leu, and Val Methyl Groups in the Active and Inactive Forms of the Mitogen-Activated Protein Kinase Extracellular Signal-Regulated Kinase 2. Biochemistry 54:4307–4319.
  • Anderson BA, Karmakar S, Hrdlicka PJ. 2015. Mixed-Sequence Recognition of Double-Stranded DNA Using Enzymatically Stable Phosphorothioate Invader Probes. Molecules 20:13780–13793.
  • Carlin DJ, Larson TC, Pfau JC, Gavett SH, Shukla A, Miller A, Hines R. 2015. Current Research and Opportunities to Address Environmental Asbestos Exposures. Environ Health Perspect 123:A194-197.
  • Mitchell DM, Stevens CB, Frey RA, Hunter SS, Ashino R, Kawamura S, Stenkamp DL. 2015. Retinoic Acid Signaling Regulates Differential Expression of the Tandemly-Duplicated Long Wavelength-Sensitive Cone Opsin Genes in Zebrafish. PLoS Genet 11:e1005483.
  • Stenkamp-Strahm CM, Nyavor YEA, Kappmeyer AJ, Horton S, Gericke M, Balemba OB. 2015. Prolonged high fat diet ingestion, obesity, and type 2 diabetes symptoms correlate with phenotypic plasticity in myenteric neurons and nerve damage in the mouse duodenum. Cell Tissue Res 361:411–426.
  • Guenther DC, Anderson GH, Karmakar S, Anderson BA, Didion BA, Guo W, Verstegen JP, Hrdlicka PJ. 2015. Invader probes: Harnessing the energy of intercalation to facilitate recognition of chromosomal DNA for diagnostic applications. Chem Sci 6:5006–5015.
  • Nadelson LS, Scaggs J, Sheffield C, McDougal OM. 2015. Integration of Video-Based Demonstrations to Prepare Students for the Organic Chemistry Laboratory. J Sci Educ Technol 24:476–483.
  • Belthoff JR, Bernhardt SA, Ball CL, Gregg M, Johnson DH, Ketterling R, Price E, Tinker JK. 2015. Burrowing Owls, Pulex irritans, and Plague. Vector Borne Zoonotic Dis 15:556–564.
  • Kebaabetswe LP, Haick AK, Gritsenko MA, Fillmore TL, Chu RK, Purvine SO, Webb-Robertson B-J, Matzke MM, Smith RD, Waters KM, Metz TO, Miura TA. 2015. Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus. Virology 483:96–107.
  • Chikh-Ali M, Bosque-Pérez NA, Vander Pol D, Sembel D, Karasev AV. 2015. Occurrence and Molecular Characterization of Recombinant Potato virus YNTN Isolates from Sulawesi, Indonesia. Plant Disease 100:269–275.
  • Anderson BA, Hrdlicka PJ. 2015. Synthesis and characterization of oligodeoxyribonucleotides modified with 2’-thio-2’-deoxy-2’-S-(pyren-1-yl)methyluridine. Bioorg Med Chem Lett 25:3999–4004.
  • Quijada P, Salunga HT, Hariharan N, Cubillo JD, El-Sayed FG, Moshref M, Bala KM, Emathinger JM, De La Torre A, Ormachea L, Alvarez R, Gude NA, Sussman MA. 2015. Cardiac Stem Cell Hybrids Enhance Myocardial Repair. Circ Res 117:695–706.
  • Hyslop JS, Boydstun AR, Fereday TR, Rusch JR, Strunk JL, Wall CT, Pena CC, McKibben NL, Harris JD, Thurber A, Punnoose A, Brotherton J, Walker P, Lowe L, Rapp B, Purnell S, Knowlton WB, Hubbard SM, Frost BJ. 2015. Synthesis and characterization of [Zn(acetate)2(amine)x] compounds (x = 1 or 2) and their use as precursors to ZnO. Mater Sci Semicond Process 38:278–289.
  • McDougal OM, Heenan PB, Jaksons P, Sansom CE, Smallfield BM, Perry NB, van Klink JW. 2015. Alkaloid variation in New Zealand kōwhai, Sophora species. Phytochemistry 118:9–16.
  • Quijada P, Hariharan N, Cubillo JD, Bala KM, Emathinger JM, Wang BJ, Ormachea L, Bers DM, Sussman MA, Poizat C. 2015. Nuclear Calcium/Calmodulin-dependent Protein Kinase II Signaling Enhances Cardiac Progenitor Cell Survival and Cardiac Lineage Commitment. J Biol Chem 290:25411–25426.
  • Guenther DC, Karmakar S, Hrdlicka PJ. 2015. Bulged Invader probes: activated duplexes for mixed-sequence dsDNA recognition with improved thermodynamic and kinetic profiles. Chem Commun (Camb) 51:15051–15054.
  • Dhakal S, Stevens CB, Sebbagh M, Weiss O, Frey RA, Adamson S, Shelden EA, Inbal A, Stenkamp DL. 2015. Abnormal retinal development in Cloche mutant zebrafish. Dev Dyn 244:1439–1455.
  • Feng X, Myers JR, Karasev AV. 2015. Bean common mosaic virus Isolate Exhibits a Novel Pathogenicity Profile in Common Bean, Overcoming the bc-3 Resistance Allele Coding for the Mutated eIF4E Translation Initiation Factor. Phytopathology 105:1487–1495.
  • Mayo JN, Bearden SE. 2015. Driving the Hypoxia-Inducible Pathway in Human Pericytes Promotes Vascular Density in an Exosome-Dependent Manner. Microcirculation 22:711–723.
  • Stojkovska I, Wagner BM, Morrison BE. 2015. Parkinson’s disease and enhanced inflammatory response. Exp Biol Med (Maywood) 240:1387–1395.
  • Sheng H, Shringi S, Baker KNK, Minnich SA, Hovde CJ, Besser TE. 2015. Standardized Escherichia coli O157:H7 Exposure Studies in Cattle Provide Evidence that Bovine Factors Do Not Drive Increased Summertime Colonization. Appl Environ Microbiol 82:964–971.
  • Groome JR, Winston V. 2015. Correction: S1-S3 counter charges in the voltage sensor module of a mammalian sodium channel regulate fast inactivation. J Gen Physiol 146:541–546.
  • Shin D, Frane ND, Brecht RM, Keeler J, Nagarajan R. 2015. A Comparative Analysis of Acyl-Homoserine Lactone Synthase Assays. Chembiochem 16:2651–2659.
  • Mallory CM, Carfi RP, Moon S, Cornell KA, Warner DL. 2015. Modification of cellular DNA by synthetic aziridinomitosenes. Bioorg Med Chem 23:7378–7385.
  • Vasdekis AE, Silverman AM, Stephanopoulos G. 2015. Origins of Cell-to-Cell Bioprocessing Diversity and Implications of the Extracellular Environment Revealed at the Single-Cell Level. Sci Rep 5:17689.
  • Zavala AG, O’Dowd JM, Fortunato EA. 2015. Infection of a Single Cell Line with Distinct Strains of Human Cytomegalovirus Can Result in Large Variations in Virion Production and Facilitate Efficient Screening of Virus Protein Function. J Virol 90:2523–2535.
  • Altieri N, Hudock D. 2016. Normative data on audiovisual speech integration using sentence recognition and capacity measures. Int J Audiol 55:206–214.
  • Brown CJ, Quates CJ, Mirabzadeh CA, Miller CR, Wichman HA, Miura TA, Ytreberg FM. 2016. New Perspectives on Ebola Virus Evolution. PLoS ONE 11:e0160410.
  • Greene CS, Foster JA, Stanton BA, Hogan DA, Bromberg Y. 2016. COMPUTATIONAL APPROACHES TO STUDY MICROBES AND MICROBIOMES. Pac Symp Biocomput 21:557–567.
  • Kingston M, Pfau JC, Gilmer J, Brey R. 2016. Selective inhibitory effects of 50-nm gold nanoparticles on mouse macrophage and spleen cells. J Immunotoxicol 13:198–208.
  • Lamb CL, Cholico GN, Perkins DE, Fewkes MT, Oxford JT, Lujan TJ, Morrill EE, Mitchell KA. 2016. Aryl Hydrocarbon Receptor Activation by TCDD Modulates Expression of Extracellular Matrix Remodeling Genes during Experimental Liver Fibrosis. Biomed Res Int 2016:5309328.
  • Li S, Mitchell J, Briggs DJ, Young JK, Long SS, Fuerst PG. 2016. Morphological Diversity of the Rod Spherule: A Study of Serially Reconstructed Electron Micrographs. PLoS ONE 11:e0150024.
  • Miller CR, Johnson EL, Burke AZ, Martin KP, Miura TA, Wichman HA, Brown CJ, Ytreberg FM. 2016. Initiating a watch list for Ebola virus antibody escape mutations. PeerJ 4:e1674.
  • Oxford AE, Jorcyk CL, Oxford JT. 2016. Neuropathies of Stüve-Wiedemann Syndrome due to mutations in leukemia inhibitory factor receptor (LIFR) gene. J Neurol Neuromedicine 1:37–44.
  • Simmons AB, Bloomsburg SJ, Billingslea SA, Merrill MM, Li S, Thomas MW, Fuerst PG. 2016. Pou4f2 knock-in Cre mouse: A multifaceted genetic tool for vision researchers. Mol Vis 22:705–717.
  • Thurston JH, Hunter NM, Cornell KA. 2016. Preparation and characterization of photoactive antimicrobial graphitic carbon nitride (g-C3N4) films. RSC Adv 6:42240–42248.
  • Wyler SL, D’Ingillo SL, Lamb CL, Mitchell KA. 2016. Monocyte chemoattractant protein-1 is not required for liver regeneration after partial hepatectomy. J Inflamm (Lond) 13:28.
  • Kaura M, Hrdlicka PJ. 2016. Efficient Discrimination of Single Nucleotide Polymorphisms (SNPs) Using Oligonucleotides Modified with C5-Pyrene-Functionalized DNA and Flanking Locked Nucleic Acid (LNA) Monomers. Chem Asian J 11:1366–1369.
  • Kaushik G, Xia Y, Yang L, Thomas MA. 2016. Psychoactive pharmaceuticals at environmental concentrations induce in vitro gene expression associated with neurological disorders. BMC Genomics 17 Suppl 3:435.
  • Kohl KD, Connelly JW, Dearing MD, Forbey JS. 2016. Microbial detoxification in the gut of a specialist avian herbivore, the Greater Sage-Grouse. FEMS Microbiol Lett 363.
  • Porter SM, Dailey HL, Hollar KA, Klein K, Harty JA, Lujan TJ. 2016. Automated measurement of fracture callus in radiographs using portable software. J Orthop Res 34:1224–1233.
  • Vincen-Brown MA, Revill AL, Pilarski JQ. 2016. Activity-dependent plasticity in the isolated embryonic avian brainstem following manipulations of rhythmic spontaneous neural activity. Respir Physiol Neurobiol 229:24–33.
  • Hanson R, Evilia C, Gilmer J, Woods L, Black B, Flores R, Pfau JC. 2016. Libby amphibole-induced mesothelial cell autoantibodies bind to surface plasminogen and alter collagen matrix remodeling. Physiol Rep 4.
  • Turner MW, Cruz R, Mattos J, Baughman N, Elwell J, Fothergill J, Nielsen A, Brookhouse J, Bartlett A, Malek P, Pu X, King MD, McDougal OM. 2016. Cyclopamine bioactivity by extraction method from Veratrum californicum. Bioorg Med Chem 24:3752–3757.
  • Kuan MI, O’Dowd JM, Chughtai K, Hayman I, Brown CJ, Fortunato EA. 2016. Human Cytomegalovirus nuclear egress and secondary envelopment are negatively affected in the absence of cellular p53. Virology 497:279–293.
  • Kuan MI, O’Dowd JM, Fortunato EA. 2016. The absence of p53 during Human Cytomegalovirus infection leads to decreased UL53 expression, disrupting UL50 localization to the inner nuclear membrane, and thereby inhibiting capsid nuclear egress. Virology 497:262–278.
  • LaFoya B, Munroe JA, Mia MM, Detweiler MA, Crow JJ, Wood T, Roth S, Sharma B, Albig AR. 2016. Notch: A multi-functional integrating system of microenvironmental signals. Dev Biol 418:227–241.
  • Mourão A, Bonnal S, Soni K, Warner L, Bordonné R, Valcárcel J, Sattler M. 2016. Structural basis for the recognition of spliceosomal SmN/B/B’ proteins by the RBM5 OCRE domain in splicing regulation. Elife 5.
  • Li X, Wang Y, Brown CJ, Yao F, Jiang Y, Top EM, Li H. 2016. Diversification of broad host range plasmids correlates with the presence of antibiotic resistance genes. FEMS Microbiol Ecol 92.
  • Moore JS, Xantheas SS, Grate JW, Wietsma TW, Gratton E, Vasdekis AE. 2016. Modular Polymer Biosensors by Solvent Immersion Imprint Lithography. J Polym Sci B Polym Phys 54:98–103.
  • Chattopadhyay A, Pinkaew D, Doan HQ, Jacob RB, Verma SK, Friedman H, Peterson AC, Kuyumcu-Martinez MN, McDougal OM, Fujise K. 2016. Fortilin potentiates the peroxidase activity of Peroxiredoxin-1 and protects against alcohol-induced liver damage in mice. Sci Rep 6:18701.
  • Li S, Woodfin M, Long SS, Fuerst PG. 2016. IPLaminator: an ImageJ plugin for automated binning and quantification of retinal lamination. BMC Bioinformatics 17:36.
  • King MD, Phillips P, Turner MW, Katz M, Lew S, Bradburn S, Andersen T, McDougal OM. 2016. Computational exploration of a protein receptor binding space with student proposed peptide ligands. Biochem Mol Biol Educ 44:63–67.
  • Deford P, Brown K, Richards RL, King A, Newburn K, Westover K, Albig AR. 2016. MAGP2 controls Notch via interactions with RGD binding integrins: Identification of a novel ECM-integrin-Notch signaling axis. Exp Cell Res 341:84–91.
  • Van Hofwegen DJ, Hovde CJ, Minnich SA. 2016. Rapid Evolution of Citrate Utilization by Escherichia coli by Direct Selection Requires citT and dctA. J Bacteriol 198:1022–1034.
  • Harvey WA, Jurgensen K, Pu X, Lamb CL, Cornell KA, Clark RJ, Klocke C, Mitchell KA. 2016. Exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) increases human hepatic stellate cell activation. Toxicology 344–346:26–33.
  • Albright JE, Stojkovska I, Rahman AA, Brown CJ, Morrison BE. 2016. Nestin-positive/SOX2-negative cells mediate adult neurogenesis of nigral dopaminergic neurons in mice. Neurosci Lett 615:50–54.
  • Fernandes KA, Bloomsburg SJ, Miller CJ, Billingslea SA, Merrill MM, Burgess RW, Libby RT, Fuerst PG. 2016. Novel axon projection after stress and degeneration in the Dscam mutant retina. Mol Cell Neurosci 71:1–12.
  • Hanson AJ, Paszczynski AJ, Coats ER. 2016. Proteomic profiling of an undefined microbial consortium cultured in fermented dairy manure: Methods development. Electrophoresis 37:790–794.
  • Krueger E, Bryant S, Shrestha N, Clark T, Hanna C, Pink D, Fologea D. 2016. Intramembrane congestion effects on lysenin channel voltage-induced gating. Eur Biophys J 45:187–194.
  • Sassani EC, Sevy C, Strasser EH, Anderson AM, Heath JA. 2016. Plasma carotenoid concentrations of incubating American kestrels (Falco sparverius) show annual, seasonal, and individual variation and explain reproductive outcome. Biol J Linn Soc Lond 117:414–421.
  • Farley CM, Dibwe DF, Ueda J, Hall EA, Awale S, Magolan J. 2016. Evaluation of synthetic coumarins for antiausterity cytotoxicity against pancreatic cancers. Bioorg Med Chem Lett 26:1471–1474.
  • Mendez-Gallardo V, Roberto ME, Kauer SD, Brumley MR. 2016. Posture effects on spontaneous limb movements, alternated stepping, and the leg extension response in neonatal rats. Physiol Behav 155:122–130.
  • Geny S, Moreno PMD, Krzywkowski T, Gissberg O, Andersen NK, Isse AJ, El-Madani AM, Lou C, Pabon YV, Anderson BA, Zaghloul EM, Zain R, Hrdlicka PJ, Jørgensen PT, Nilsson M, Lundin KE, Pedersen EB, Wengel J, Smith CIE. 2016. Next-generation bis-locked nucleic acids with stacking linker and 2’-glycylamino-LNA show enhanced DNA invasion into supercoiled duplexes. Nucleic Acids Res 44:2007–2019.
  • Aldape MJ, Bayer CR, Bryant AE, Stevens DL. 2016. A novel murine model of Clostridium sordellii myonecrosis: Insights into the pathogenesis of disease. Anaerobe 38:103–110.
  • Loftie-Eaton W, Yano H, Burleigh S, Simmons RS, Hughes JM, Rogers LM, Hunter SS, Settles ML, Forney LJ, Ponciano JM, Top EM. 2016. Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance. Mol Biol Evol 33:885–897.
  • Simmons AB, Merrill MM, Reed JC, Deans MR, Edwards MM, Fuerst PG. 2016. Defective Angiogenesis and Intraretinal Bleeding in Mouse Models With Disrupted Inner Retinal Lamination. Invest Ophthalmol Vis Sci 57:1563–1577.
  • Vincen-Brown MA, Whitesitt KC, Quick FG, Pilarski JQ. 2016. Studying respiratory rhythm generation in a developing bird: Hatching a new experimental model using the classic in vitro brainstem-spinal cord preparation. Respir Physiol Neurobiol 224:62–70.
  • Swann HE, Kempe RB, Van Orden AM, Brumley MR. 2016. Serotonergic activation of locomotor behavior and posture in one-day old rats. Behav Brain Res 302:104–114.
  • Park B, Holman RW, Slade T, Murdock M, Rodnick KJ, Swislocki ALM. 2016. A Biochemistry Question-Guided Derivation of a Potential Mechanism for HbA1c Formation in Diabetes Mellitus Leading to a Data-Driven Clinical Diagnosis. J Chem Educ 93:795–797.
  • Anderson BA, Hrdlicka PJ. 2016. Merging Two Strategies for Mixed-Sequence Recognition of Double-Stranded DNA: Pseudocomplementary Invader Probes. J Org Chem 81:3335–3346.
  • French JMT, King MD, McDougal OM. 2016. Quantitative Determination of Vinpocetine in Dietary Supplements. Nat Prod Commun 11:607–609.
  • Jones-Mensah E, Karki M, Magolan J. 2016. Dimethyl Sulfoxide as a Synthon in Organic Chemistry. Synthesis 48:1421–1436.
  • Kaushik G, Huber DP, Aho K, Finney B, Bearden S, Zarbalis KS, Thomas MA. 2016. Maternal exposure to carbamazepine at environmental concentrations can cross intestinal and placental barriers. Biochem Biophys Res Commun 474:291–295.
  • Borgogna TR, Borgogna J-L, Mielke JA, Brown CJ, Top EM, Botts RT, Cummings DE. 2016. High Diversity of CTX-M Extended-Spectrum β-Lactamases in Municipal Wastewater and Urban Wetlands. Microb Drug Resist 22:312–320.
  • Cho NE, Bang B-R, Gurung P, Li M, Clemens DL, Underhill TM, James LP, Chase JR, Saito T. 2016. Retinoid regulation of antiviral innate immunity in hepatocytes. Hepatology 63:1783–1795.
  • Morrison BE. 2016. Discovery of nigral dopaminergic neurogenesis in adult mice. Neural Regen Res 11:878–881.
  • Rasmussen EB, Robertson SH, Rodriguez LR. 2016. The utility of behavioral economics in expanding the free-feed model of obesity. Behav Processes 127:25–34.
  • Jones-Mensah E, Nickerson LA, Deobald JL, Knox HJ, Ertel AB, Magolan J. 2016. Cerium-free Luche reduction directed by rehydrated alumina. Tetrahedron 72:3748–3753.
  • Gunderson MP, Pickett MA, Martin JT, Hulse EJ, Smith SS, Smith LA, Campbell RM, Lowers RH, Boggs ASP, Guillette LJ. 2016. Variations in hepatic biomarkers in American alligators (Alligator mississippiensis) from three sites in Florida, USA. Chemosphere 155:180–187.
  • Warner DL, Brown EC, Shadle SE. 2016. Laboratory Instrumentation: An Exploration of the Impact of Instrumentation on Student Learning. J Chem Educ 93:1223–1231.
  • Jones JA, Price E, Miller D, Hevener KE. 2016. A simplified protocol for high-yield expression and purification of bacterial topoisomerase I. Protein Expr Purif 124:32–40.
  • Magunda F, Thompson CW, Schneider DA, Noh SM. 2016. Anaplasma marginale Actively Modulates Vacuolar Maturation during Intracellular Infection of Its Tick Vector, Dermacentor andersoni. Appl Environ Microbiol 82:4715–4731.
  • Krueger E, Chang AN, Brown D, Eixenberger J, Brown R, Rastegar S, Yocham KM, Cantley KD, Estrada D. 2016. Graphene Foam as a three-dimensional Platform for Myotube Growth. ACS Biomater Sci Eng 2:1234–1241.
  • Hayden EJ. 2016. Empirical analysis of RNA robustness and evolution using high-throughput sequencing of ribozyme reactions. Methods 106:97–104.
  • Banzhaf W, Baumgaertner B, Beslon G, Doursat R, Foster JA, McMullin B, de Melo VV, Miconi T, Spector L, Stepney S, White R. 2016. Defining and simulating open-ended novelty: requirements, guidelines, and challenges. Theory Biosci 135:131–161.
  • Bryant S, Shrestha N, Carnig P, Kosydar S, Belzeski P, Hanna C, Fologea D. 2016. Purinergic control of lysenin’s transport and voltage-gating properties. Purinergic Signal 12:549–559.
  • Hanson AJ, Guho NM, Paszczynski AJ, Coats ER. 2016. Community proteomics provides functional insight into polyhydroxyalkanoate production by a mixed microbial culture cultivated on fermented dairy manure. Appl Microbiol Biotechnol 100:7957–7976.
  • Yano H, Wegrzyn K, Loftie-Eaton W, Johnson J, Deckert GE, Rogers LM, Konieczny I, Top EM. 2016. Evolved plasmid-host interactions reduce plasmid interference cost. Mol Microbiol 101:743–756.
  • Liyu D, Nemati SH, Vasdekis AE. 2016. Solvent-assisted prototyping of microfluidic and optofluidic microsystems in polymers. J Polym Sci Part B: Polym Phys 54:1681–1686.
  • Krueger E, Shim J, Fathizadeh A, Chang AN, Subei B, Yocham KM, Davis PH, Graugnard E, Khalili-Araghi F, Bashir R, Estrada D, Fologea D. 2016. Modeling and Analysis of Intercalant Effects on Circular DNA Conformation. ACS Nano 10:8910–8917.
  • Chang T-M, Xantheas SS, Vasdekis AE. 2016. Mesoscale Polymer Dissolution Probed by Raman Spectroscopy and Molecular Simulations. J Phys Chem B 120:10581–10587.
  • Ha TT, Burwell ST, Goodwin ML, Noeker JA, Heggland SJ. 2016. Pleiotropic roles of Ca+2/calmodulin-dependent pathways in regulating cadmium-induced toxicity in human osteoblast-like cell lines. Toxicol Lett 260:18–27.
  • Heidari Pahlavian S, Bunck AC, Thyagaraj S, Giese D, Loth F, Hedderich DM, Kröger JR, Martin BA. 2016. Accuracy of 4D Flow Measurement of Cerebrospinal Fluid Dynamics in the Cervical Spine: An In Vitro Verification Against Numerical Simulation. Ann Biomed Eng 44:3202–3214.
  • Sukeena JM, Galicia CA, Wilson JD, McGinn T, Boughman JW, Robison BD, Postlethwait JH, Braasch I, Stenkamp DL, Fuerst PG. 2016. Characterization and Evolution of the Spotted Gar Retina. J Exp Zool B Mol Dev Evol 326:403–421.
  • Lamb CL, Cholico GN, Pu X, Hagler GD, Cornell KA, Mitchell KA. 2016. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) increases necroinflammation and hepatic stellate cell activation but does not exacerbate experimental liver fibrosis in mice. Toxicol Appl Pharmacol 311:42–51.
  • Morrill EE, Tulepbergenov AN, Stender CJ, Lamichhane R, Brown RJ, Lujan TJ. 2016. A validated software application to measure fiber organization in soft tissue. Biomech Model Mechanobiol 15:1467–1478.
  • Nichols BL, Diaz-Sotomayor M, Avery SE, Chacko SK, Hadsell DL, Baker SS, Hamaker BR, Yan LK, Lin HM, Quezada-Calvillo R. 2016. Milk glucosidase activity enables suckled pup starch digestion. Mol Cell Pediatr 3:4.
  • Warner L, Gjersing E, Follett SE, Elliott KW, Dzyuba SV, Varga K. 2016. The effects of high concentrations of ionic liquid on GB1 protein structure and dynamics probed by high-resolution magic-angle-spinning NMR spectroscopy. Biochem Biophys Rep 8:75–80.
  • Coats ER, Watson BS, Brinkman CK. 2016. Polyhydroxyalkanoate synthesis by mixed microbial consortia cultured on fermented dairy manure: Effect of aeration on process rates/yields and the associated microbial ecology. Water Res 106:26–40.
  • Crossley DA, Burggren WW, Reiber CL, Altimiras J, Rodnick KJ. 2016. Mass Transport: Circulatory System with Emphasis on Nonendothermic Species. Compr Physiol 7:17–66.
  • King MD, Long T, Andersen T, McDougal OM. 2016. Genetic Algorithm Managed Peptide Mutant Screening: Optimizing Peptide Ligands for Targeted Receptor Binding. J Chem Inf Model 56:2378–2387.
  • Bryant AE, Aldape MJ, Bayer CR, Katahira EJ, Bond L, Nicora CD, Fillmore TL, Clauss TRW, Metz TO, Webb-Robertson B-J, Stevens DL. 2017. Effects of delayed NSAID administration after experimental eccentric contraction injury – A cellular and proteomics study. PLoS ONE 12:e0172486.
  • Escobar MD, Hunt JL. 2017. A cost-effective RNA extraction technique from animal cells and tissue using silica columns. J Biol Methods 4.
  • Gee BM, Devine N, Aubuchon-Endsley NL, Brumley M, Ramsdell-Hudock HL, Swann HE. 2017. The Reciprocity Team: Development of an Interprofessional Research Collaboration. J Allied Health 46:e43–e49.
  • Haga PT, Pizzichelli G, Mortensen M, Kuchta M, Pahlavian SH, Sinibaldi E, Martin BA, Mardal K-A. 2017. A numerical investigation of intrathecal isobaric drug dispersion within the cervical subarachnoid space. PLoS ONE 12:e0173680.
  • Love JE, Day RJ, Gause JW, Brown RJ, Pu X, Theis DI, Caraway CA, Poon WW, Rahman AA, Morrison BE, Rohn TT. 2017. Nuclear uptake of an amino-terminal fragment of apolipoprotein E4 promotes cell death and localizes within microglia of the Alzheimer’s disease brain. Int J Physiol Pathophysiol Pharmacol 9:40–57.
  • Rodnick KJ, Holman RW, Ropski PS, Huang M, Swislocki ALM. 2017. A Perspective on Reagent Diversity and Non-covalent Binding of Reactive Carbonyl Species (RCS) and Effector Reagents in Non-enzymatic Glycation (NEG): Mechanistic Considerations and Implications for Future Research. Front Chem 5:39.
  • Vasdekis AE, Silverman AM, Stephanopoulos G. 2017. Exploiting Bioprocessing Fluctuations to Elicit the Mechanistics of De Novo Lipogenesis in Yarrowia lipolytica. PLoS ONE 12:e0168889.
  • Warner LR, Gatzeva-Topalova PZ, Doerner PA, Pardi A, Sousa MC. 2017. Flexibility in the Periplasmic Domain of BamA Is Important for Function. Structure 25:94–106.
  • Pinkaew D, Chattopadhyay A, King MD, Chunhacha P, Liu Z, Stevenson HL, Chen Y, Sinthujaroen P, McDougal OM, Fujise K. 2017. Fortilin binds IRE1α and prevents ER stress from signaling apoptotic cell death. Nat Commun 8:18.
  • Bowman K, Rose J. 2017. Estradiol stimulates glycogen synthesis whereas progesterone promotes glycogen catabolism in the uterus of the American mink (Neovison vison). Anim Sci J 88:45–54.
  • Gilmer J, Harding T, Woods L, Black B, Flores R, Pfau J. 2017. Mesothelial cell autoantibodies upregulate transcription factors associated with fibrosis. Inhal Toxicol 29:10–17.
  • Coats ER, Brinkman CK, Lee S. 2017. Characterizing and contrasting the microbial ecology of laboratory and full-scale EBPR systems cultured on synthetic and real wastewaters. Water Res 108:124–136.
  • Hayes TR, Bottorff SC, Slocumb WS, Barnes CL, Clark AE, Benny PD. 2017. Influence of bidentate ligand donor types on the formation and stability in 2 + 1 fac-[MI(CO)3]+ (M = Re, 99mTc) complexes. Dalton Trans 46:1134–1144.
  • Grassley JS, Connor KC, Bond L. 2017. Game-based online antenatal breastfeeding education: A pilot. Appl Nurs Res 33:93–95.
  • Swann HE, Kauer SD, Allmond JT, Brumley MR. 2017. Stimulation of 5-HT2A receptors recovers sensory responsiveness in acute spinal neonatal rats. Behav Neurosci 131:92–98.
  • Bednarz M, Stunnenberg BC, Kusters B, Kamsteeg E-J, Saris CG, Groome J, Winston V, Meola G, Jurkat-Rott K, Voermans NC. 2017. A novel Ile1455Thr variant in the skeletal muscle sodium channel alpha-subunit in a patient with a severe adult-onset proximal myopathy with electrical myotonia and a patient with mild paramyotonia phenotype. Neuromuscular Disorders 27:175–182.
  • Parikh GL, Forbey JS, Robb B, Peterson RO, Vucetich LM, Vucetich JA. 2017. The influence of plant defensive chemicals, diet composition, and winter severity on the nutritional condition of a free-ranging, generalist herbivore. Oikos 126:n/a-n/a.
  • Hendrickson KL, Rasmussen EB. 2017. Mindful eating reduces impulsive food choice in adolescents and adults. Health Psychol 36:226–235.
  • Miller RA, Bond L, Migas PN, Carlisle JD, Kaltenecker GS. 2017. CONTRASTING HABITAT ASSOCIATIONS OF SAGEBRUSH-STEPPE SONGBIRDS IN THE INTERMOUNTAIN WEST. West Birds 48:35–55.
  • Nemati SH, Liyu DA, Canul AJ, Vasdekis AE. 2017. Solvent immersion imprint lithography: A high-performance, semi-automated procedure. Biomicrofluidics 11:024111.
  • Nyavor YEA, Balemba OB. 2017. Diet-induced dysmotility and neuropathy in the gut precedes endotoxaemia and metabolic syndrome: the chicken and the egg revisited. J Physiol (Lond) 595:1441–1442.
  • Aldape MJ, Tao A, Heeney DD, McIndoo ER, French JM, Xu D. 2017. Experimental identification and computational characterization of a novel extracellular metalloproteinase produced by Clostridium sordellii. RSC Adv 7:13928–13938.
  • Hughes A, Oxford AE, Tawara K, Jorcyk CL, Oxford JT. 2017. Endoplasmic Reticulum Stress and Unfolded Protein Response in Cartilage Pathophysiology; Contributing Factors to Apoptosis and Osteoarthritis. Int J Mol Sci 18.
  • Creechley JJ, Krentz ME, Lujan TJ. 2017. Fatigue life of bovine meniscus under longitudinal and transverse tensile loading. J Mech Behav Biomed Mater 69:185–192.
  • Misra N, Wines TF, Knopp CL, McGuire MA, Tinker JK. 2017. Expression, immunogenicity and variation of iron-regulated surface protein A from bovine isolates of Staphylococcus aureus. FEMS Microbiol Lett 364.
  • Acharya S, Stark TD, Oh ST, Jeon S, Pak SC, Kim M, Hur J, Matsutomo T, Hofmann T, Hill RA, Balemba OB. 2017. (2R,3S,2″R,3″R)-Manniflavanone Protects Proliferating Skeletal Muscle Cells against Oxidative Stress and Stimulates Myotube Formation. J Agric Food Chem 65:3636–3646.
  • Shrestha N, Bryant SL, Thomas C, Richtsmeier D, Pu X, Tinker J, Fologea D. 2017. Stochastic sensing of Angiotensin II with lysenin channels. Sci Rep 7:2448.
  • Castro JM, Horn DA, Pu X, Lewis KA. 2017. Recombinant expression and purification of the RNA-binding LARP6 proteins from fish genetic model organisms. Protein Expr Purif 134:147–153.
  • Damase TR, Spencer A, Samuel B, Allen PB. 2017. Biomimetic Molecular Signaling using DNA Walkers on Microparticles. Sci Rep 7:4081.
  • Hamilton D, Bowerman M, Colwell J, Donohoe G, Myers B. 2017. Spectroscopic analysis for mapping wildland fire effects from remotely sensed imagery. J Unmanned Veh Sys 5:146–158.
  • Robertson SH, Boomhower SR, Rasmussen EB. 2017. High-fat diet alters weight, caloric intake, and haloperidol sensitivity in the context of effort-based responding. Behav Pharmacol 28:323–333.
  • Strong AD, Daniels RL. 2017. Live-cell calcium imaging of adherent and non-adherent GL261 cells reveals phenotype-dependent differences in drug responses. BMC Cancer 17:516.
  • Eixenberger JE, Anders CB, Hermann RJ, Brown RJ, Reddy KM, Punnoose A, Wingett DG. 2017. Rapid Dissolution of ZnO Nanoparticles Induced by Biological Buffers Significantly Impacts Cytotoxicity. Chem Res Toxicol 30:1641–1651.
  • Dong S-H, Frane ND, Christensen QH, Greenberg EP, Nagarajan R, Nair SK. 2017. Molecular basis for the substrate specificity of quorum signal synthases. Proc Natl Acad Sci USA 114:9092–9097.
  • Doumas DM, Esp S, Flay B, Bond L. 2017. A Randomized Controlled Trial Testing the Efficacy of a Brief Online Alcohol Intervention for High School Seniors. J Stud Alcohol Drugs 78:706–715.
  • Loftie-Eaton W, Bashford K, Quinn H, Dong K, Millstein J, Hunter S, Thomason MK, Merrikh H, Ponciano JM, Top EM. 2017. Compensatory mutations improve general permissiveness to antibiotic resistance plasmids. Nat Ecol Evol 1:1354–1363.
  • Thirunavukkarasu S, Plain KM, de Silva K, Marais BJ, Whittington RJ. 2017. Applying the One Health Concept to Mycobacterial Research – Overcoming Parochialism. Zoonoses Public Health 64:401–422.
  • Turner MW, Cort JR, McDougal OM. 2017. α-Conotoxin Decontamination Protocol Evaluation: What Works and What Doesn’t. Toxins (Basel) 9.
  • Cannon BL, Kellis DL, Patten LK, Davis PH, Lee J, Graugnard E, Yurke B, Knowlton WB. 2017. Coherent Exciton Delocalization in a Two-State DNA-Templated Dye Aggregate System. J Phys Chem A 121:6905–6916.
  • Warburton KJ, Everingham JB, Helms JL, Kazanovicz AJ, Hollar KA, Brourman JD, Fox SM, Lujan TJ. 2017. Wear testing of a canine hip resurfacing implant that uses highly cross-linked polyethylene. J Orthop Res.
  • Aldape MJ, Packham AE, Heeney DD, Rice SN, Bryant AE, Stevens DL. 2017. Fidaxomicin reduces early toxin A and B production and sporulation in Clostridium difficilein vitro. J Med Microbiol 66:1393–1399.
  • Hamilton D, Myers B, Branham J. 2017. Evaluation of Texture as an Input of Spatial Context for Machine Learning Mapping of Wildland Fire Effects. Signal & Image Processing: An International Journal (SIPIJ) 8.
  • Bryant A, Katahira E, Huang D, Stevens D. 2017. Effects of Iclaprim and Trimethoprim on Exotoxin Production by Methicillin-resistant Staphylococcus aureus. Open Forum Infect Dis 4:S372–S373.
  • Zhang J, Peng C-A. 2017. Poly(N-isopropylacrylamide) modified polydopamine as a temperature-responsive surface for cultivation and harvest of mesenchymal stem cells. Biomater Sci 5:2310–2318.
  • Hobdey SE, Katahira EJ, Dockstader P, Davidson SM, Bond L, Bolz DD, Bryant AE, Stevens DL. 2017. Subinhibitory Dalbavancin Attenuates Exotoxin Production from Methicillin-Sensitive and Methicillin-Resistant Staphylococcus aureus In Vitro. Antimicrob Agents Chemother 61.
  • Marx HE, Dentant C, Renaud J, Delunel R, Tank DC, Lavergne S. 2017. Riders in the sky (islands): using a mega-phylogenetic approach to understand plant species distribution and coexistence at the altitudinal limits of angiosperm plant life. J Biogeogr 44:2618–2630.
  • Thurston JH, Hunter NM, Wayment LJ, Cornell KA. 2017. Urea-derived graphitic carbon nitride (u-g-C3N4) films with highly enhanced antimicrobial and sporicidal activity. J Colloid Interface Sci 505:910–918.
  • Coslovich T, Brumley MR, D’Angelo G, Della Mora A, Swann HE, Ortolani F, Taccola G. 2017. Histamine modulates spinal motoneurons and locomotor circuits. J Neurosci Res.
  • Karmakar S, Guenther DC, Gibbons BC, Hrdlicka PJ. 2017. Recognition of mixed-sequence DNA using double-stranded probes with interstrand zipper arrangements of O2’-triphenylene- and coronene-functionalized RNA monomers. Org Biomol Chem 15:9362–9371.
  • Kaushik G, Xia Y, Pfau JC, Thomas MA. 2017. Dysregulation of autism-associated synaptic proteins by psychoactive pharmaceuticals at environmental concentrations. Neurosci Lett 661:143–148.
  • Simmons AB, Bloomsburg SJ, Sukeena JM, Miller CJ, Ortega-Burgos Y, Borghuis BG, Fuerst PG. 2017. DSCAM-mediated control of dendritic and axonal arbor outgrowth enforces tiling and inhibits synaptic plasticity. Proc Natl Acad Sci USA 114:E10224–E10233.
  • Stender CJ, Rust E, Martin PT, Neumann EE, Brown RJ, Lujan TJ. 2017. Modeling the effect of collagen fibril alignment on ligament mechanical behavior. Biomech Model Mechanobiol.
  • Srivastava I, Aldape MJ, Bryant AE, Stevens DL. 2017. Spontaneous C. septicum gas gangrene: A literature review. Anaerobe 48:165–171.
  • Sass LR, Khani M, Natividad GC, Tubbs RS, Baledent O, Martin BA. 2017. A 3D subject-specific model of the spinal subarachnoid space with anatomically realistic ventral and dorsal spinal cord nerve rootlets. Fluids Barriers CNS 14:36.
  • Johnson NA, Wolfe SR, Kabir H, Andrade GA, Yap GPA, Heiden ZM, Moberly JG, Roll MF, Waynant KV. 2017. Deconvoluting the Innocent vs. Non-Innocent Behavior of N,N-Diethylphenylazothioformamide Ligands with Copper Sources. Eur J Inorg Chem 2017:5576–5581.
  • Brininger C, Spradlin S, Cobani L, Evilia C. 2017. The more adaptive to change, the more likely you are to survive: Protein adaptation in extremophiles. Semin Cell Dev Biol.
  • McGinn TE, Mitchell DM, Meighan PC, Partington N, Leoni DC, Jenkins CE, Varnum MD, Stenkamp DL. 2018. Restoration of Dendritic Complexity, Functional Connectivity, and Diversity of Regenerated Retinal Bipolar Neurons in Adult Zebrafish. J Neurosci 38:120–136.
  • Strong AD, Indart MC, Hill NR, Daniels RL. 2018. GL261 glioma tumor cells respond to ATP with an intracellular calcium rise and glutamate release. Mol Cell Biochem.
Book Chapters

This bibliography includes book chapters written by participants in INBRE 3 in Idaho (May 2014 – February 2018).

  • Bryant AE, Stevens DL. 2014. Streptococcus pyogenes, p. 2285–2299. In Principles and Practice of Infectious Diseases8th Edition. Elsevier, Philadelphia, PA.
  • Foster J. 2015. Microbial Diversity, Barcoding approaches. In Encyclopedia of Metagenomics. Springer.
  • Pfau JC, Serve K, Woods L, Noonan CW. 2015. Asbestos Exposure and Autoimmune Disease. Elsevier.
  • Stevens DL, Bryant AE. 2015. Clostridial Toxins in the Pathogenesis of Gas Gangrene. In The Comprehensive Sourcebook of Bacterial Protein Toxins4th Edition. Elsevier, Amsterdam.
  • Jorcyk C, Mikelonas D, Oxford J, Tawara K. 2016. Stüve-Wiedemann syndrome. In Orphanet Encyclopedia of Rare Diseases, ORPHA3206 ed.
  • Nazari A, Farid A, Cornell KA. 2016. Impedance-based water quality monitoring using the parallel plate method, p. 378–392. In Proceedings of the American Society of Civil Engineers, Geo-Chicago 2016.
  • Pu X, Wang Z, Klaunig JE. 2016. Cryopreservation of human blood for alkaline and Fpg-modified comet assay. In Toxicol Mech Methods.
  • Rodnick KJ, Planas JV. 2016. The Stress and Stress Mitigation Effects of Exercise: Cardiovascular, Metabolic, and Skeletal Muscle Adjustments, p. 251–294. In Fish Physiology – Biology of Stress in Fish. Academic Press, San Diego, CA.
  • Stevens DL, Bryant AE. 2016. Impetigo, Erysipelas and Cellulitis. In Streptococcus pyogenes, Basic Biology to Clinical Manifestations.
  • Stevens DL, Bryant AE. 2016. Severe Group A Streptococcal Infections. In Streptococcus pyogenes, Basic Biology to Clinical Manifestations.
  • Vasdekis AE, Stephanopoulos G. 2016. Single Cell Phenotypic Screening in Inverse Metabolic Engineering. In Microfluidic Methods for Molecular Biology. Springer.
  • Oxford JT. 2016. Molecular Genetics of Stüve–Wiedemann Syndrome. In eLS. John Wiley & Sons Ltd, Chichester.
  • Hobdey SE, Stevens DL. 2017. Infections due to Staphylococci. In Infectious Diseases. Scientific American Medicine.
  • Hobdey SE, Stevens DL. 2017. Infections due to Streptococcus Pneumoniae. In Infectious Diseases. Scientific American Medicine.
  • Spradlin S, Cobani L, Brininger C, Evilia C. 2017. Archaea were trailblazers in signaling evolution: Protein adaptation and structural fluidity as a form of intracellular communication. In Biocommunication in Archaea. Springer International Publishing AG.
Grants
inbre-bullseye-green-and-blue-april-2018

2017 GRANTS AWARDED TO IDAHO INBRE RESEARCHERS

Reported to INBRE as of December 2017

NON-FEDERAL:

Aldape, Mike: Merck, Inc,

“Effects of CB-183,315 on the Growth, Sporulation, and Expression and Production of Virulence Factors Associated with Clostridium difficile Infection”

Aubuchon-Endsley, Nicki: Idaho State University

“Career Path Internships”

Aubuchon-Endsley, Nicki: Idaho State University Department of Physical and Occupational Therapy

“RECIPROCITY Project”

Aubuchon-Endsley, Nicki: Idaho State University Office of Research

“Faculty Start-up”

Aubuchon-Endsley, Nicki: Idaho State University Psychology Department

“Travel Grant”

Beard, Richard: American Heart Association

“Mechanisms for Oncostatin M Induced TAMP Repression and Barrier Dysfunction in Cerebral Microvascular Endothelium”

Brown, Tyler: Idaho Department of Commerce

“Evaluation of the Ankle Roll Guard’s Effectiveness to Improve its Clinical Benefit”

Brumley, Michele: Burroughs Wellcome Fund

“Effects of Locomotion on Tendon Formation in the Developing Neonate”

Bryant, Amy: Merck, Inc.

“Efficacy of Tedizolid in Experimental Necrotizing Fasciitis/Myonecrosis Caused by Erythromycin/Clindamycin Resistant Group A Streptococci”

Bryant, Amy: Motif Biosciences

“The Effects of Iclaprim on Toxin Gene Expression and Protein Production by Methicillin-sensitive and Methicillin-resistant Staphylococcus aureus

Chase, Jennifer: MJ Murdock Charitable Trust

“Modeling carbohydrate flux in cultured uterine cells”

Cornell, Kenneth: Gem Pharmaceuticals

“Anti-PD-1/GPX-150 and GPX-160 Combination Therapy Studies”

Dadabay, Carolyn: Burroughs Wellcome Fund

“Isolation and Identification of Bioactive Plant Compounds Identified through a Co-evolutionary Screen”

Ferguson, Matt: Research Corporation and Gordon and Betty Moore Foundation

“Scialog: Deconstructing the Cell’s Mechanical Circuits”

Fologea, Daniel: Idaho State Board of Education

“Engineered advancements in measuring molecular interactions in support of local bioindustry”

Forbey, Jennifer: Murdock Charitable Trust

“Wildlife-Directed Bioprospecting of Chemical Diversity for Pest Control”

Hobdey, Sarah: Forest Research Institute, Inc.

“The Effects of Dalbavancin on Toxin Expression and Production by Methicillin-sensitive and Methicillin-resistant Staphylococcus aureus

Johnston, Nancy: Lewis-Clark State College Division of Natural Sciences

“Travel”

Jorcyk, Cheryl: MJ Murdock Charitable Trust

“Investigating prostate tumor cell migration”

Jorcyk, Cheryl: The Smylie Family Cancer Research Fund

“Inflammatory cytokines in tumor invasion and metastasis”

Latta, Leigh: Idaho Higher Education Research Council

“The Effect of Spontaneous Mutation on Neural Function”

Latta, Leigh: Idaho Higher Education Research Council

“The Effects of Spontaneous Mutation on Age-Related Changes in Protein Aggregation”

Latta, Leigh: Lewis-Clark State College

“Travel”

Long, Seth: Idaho Higher Education Research Council

“Student Support”

Martin, Bryn: Alcyone Lifesciences

“An in vitro platform for pharmacokinetic quantification of intrathecal infusion devices”

Martin, Bryn: Minnetronix Corporation

“An Experimental and Computational Platform for Neuropheresis Device Assessment”

Martin, Bryn: University of Idaho

“Hydrodynamic Simulator for Brain Therapeutic Development”

Martin, Bryn: Voyager Therapeutics Corporation

“A subject-specific computational simulator of intrathecal drug dispersion in non-human primates”

Powell, Matt: Smith Bucklin, United Soybean Board

“Evaluation of the Nutritional Value of International Soybean Meal Supplies in Multiple”

Powell, Matt: Smith Bucklin, United Soybean Board

“Exploring the Use of Trimethylamine Oxide as a Feed Additive to Combat Soy-Induced

Powell, Matt: Soy Aquaculture Alliance

“Comparing Selected vs. Non-Selected Rainbow Trout to Elucidate Resistance to Soybean

Meal Caused Distal Enteritis”

Powell, Matt: Western Regional Aquaculture Center

“If you feed them, will they grow? A dietary approach to improving the growth of juvenile cutthroat trout”

Schiele, Nate: Burroughs Wellcome Fund

“Investigating effects of locomotion on tendon formation in developing neonates in vivo

Schiele, Nate: University of Idaho

“Investigating mechanoregulation of stem cells for tendon tissue engineering”

Schiele, Nate: University of Idaho Office of Research and Economic Development

“Small Scale Universal Testing System”

Schiele, Nate: University of Idaho Office of Undergraduate Research

“Enhancing the student experience through integration of novel research projects: Exploring mechanical regulation of stem cells in Tissue Engineering and Regenerative Medicine”

Tinker, Juliette: MJ Murdock Charitable Trust

“Characterization of ArtAB: a novel enterotoxin from Salmonella typhimurium

Warner, Don: Gem Pharmaceuticals

“Synthesis and in vitro potency of GPX-150/GPX-160 analogs”

FEDERAL NON_PHS

Browning, Jim: Department of Defense

“Phase Controlled Magnetron Development”

Brown, Tyler: Department of Defense

“Assessing Operational War Fighter Performance with Emerging IMU Technology”

Bryant, Amy: Veterans Administration

“Research Career Scientist Award””

Cornell, Kenneth: Agency for International Development

“Visiting Professorship to University of San Agustin”

Fologea, Daniel: National Aeronautics and Space Administration

“Microgravity Induced Modulation of Ca2+ Transport Mediated by TRPV4 as a Risk Factor for Osteoporosis”

Fologea, Daniel: National Science Foundation

“NSF Career – Single Molecule Characterization & Controlled Transport Using Lysenin Channels”

Forbey, Jennifer: National Science Foundation

“Collaborative Research: Modeling the Tradeoffs of Food-, Fear-, and Thermal-Scapes to Explain Habitat Use by Mammalian”

Forbey, Jennifer: US Department of Interior

“Using Near-Infrared Reflectance Spectroscopy (NIRS) to Quantify Dietary Quality of Sagebrush and Differentiate Species and Subspecies of Sagebrush”

Harris, Jerry: National Aeronautics and Space Administration

“ISGC Collaboration Grant – Travel to NASA Glenn Research Center”

Hayden, Eric: National Aeronautics and Space Administration

“RNA “Sea-Scapes”: Fitness Landscapes with a Changing Environment”

Hayden, Eric: National Science Foundation

“An Empirical Examination of the Evolution of Innovation”

Lee, Jeunghoon: National Science Foundation

“Rapid Colorimetric Detection of Biomarkers via Catalytic Disassembly of Gold Nanoparticle Aggregates”

Lujan, Trevor: National Science Foundation

“CAREER: Characterization and Simulation of Failure Mechanisms in Soft Fibrous Tissue”

Magolan, Jakob: National Science Foundation

“SusChEM: Efficient Synthesis Using Heterogeneous Tools”

Martin, Bryn: National Aeronautics and Space Administration

“Advanced Ocular and Brain MRI of Astronauts Following Long Duration Space Flight”

Martin, Bryn: National Aeronautics and Space Administration

“Idaho Space Grant Consortium Graduate Student Fellowship”

Martin, Bryn: National Aeronautics and Space Administration

“Idaho Space Grant Consortium Undergraduate Student Fellowship”

Martin, Bryn: National Aeronautics and Space Administration

“Simulations of CSF, Hemodynamics and Ocular Risk (VIIP SCHOLAR)”

Marx, Chris: Department of Defense

“Associating growth conditions with cellular composition in Gram-negative bacteria”

Marx, Chris: Department of Energy

“A high-throughput pipeline for mapping inter-species interactions and metabolic synergy relevant to next-generation biofuel production”

Marx, Chris: National Science Foundation BEACON

“It only gets worse from here: adaptation in the face of ever-larger pulses of stress”

Marx, Chris: National Science Foundation BEACON

“Off the deep end of the gene pool: deep-sequencing and metabolomics analysis as a framework for uncovering fitness landscapes and modeling evolvability in engineered metabolic networks”

Marx, Chris: National Science Foundation BEACON

“What does the flux say: Empirical validation of flux balance analysis”

Marx, Chris: National Science Foundation

“Collaborative Research: Deep-sequencing analysis of edited metabolic pathways to uncover, model, and overcome epistatic constraints upon optimization”

McGowan, Craig: Department of Defense

“Tuning of Musculoskeletal Mechanical Properties for Bipedal Hopping: Biological Mechanisms for Either Efficiency versus Power”

McGowan, Craig: Department of Defense

“CAREER: Establishing links between musculoskeletal morphology and the biomechanics of bipedal hopping in desert environments”

Moberly, James: National Science Foundation

“EAGER: Rapid Screening and Identification of Organisms which Hyper-Accumulate Metals”

Oxford, Julie: National Aeronautics and Space Administration

“Role of Cellular Connectivity in Maintaining Osteogenesis under Simulated Microgravity in Response to Mechanical Challenges”

Oxford, Julie: National Science Foundation

“Gateway Scholarships for Biological Sciences”

Stenkamp, Deborah: National Science Foundation

“Collaborative Research: Diversification of Sensory Systems in Novel Habitat: Enhanced Vision or Compensation in Other Modalities?

Tinker, Juliette: US Department of Agriculture

“Novel vaccines to prevent bovine mastitis caused by Staphylococcus aureus and Streptococcus uberis

Warner, Lisa: National Science Foundation

“RII Track-4: Using in-cell NMR to follow 13C-fluxomics in living cells”

Ytreberg, F Marty: National Science Foundation

“RII Track-2 FEC: Using biophysical protein models to map genetic variation to phenotypes”

FEDERAL PHS

Ammons, Mary Cloud: National Institutes of Health, NIGMS

“Metabolomic Analysis as a Tool to Understanding the Use of Novel Therapeutics in a Host-Pathogen Model of the Chronic Wound Environments”

Bond, Laura: National Institutes of Health, NIGMS

“Subaward: Clinical and Translational Research Infrastructure Network IDeA-CTR”

Cornell, Kenneth: National Institutes of Health, NIGMS

“Development of Novel Antibiotics to Treat Protozoan Parasites”

Ferguson, Matt: National Institutes of Health, NIGMS

“Spatiotemporal Dynamics of Transcription and Splicing by Two Photon 3D Orbital Tracking”

Fitzpatrick, Clare: National Institutes of Health, NIGMS

“Subaward: Optimizing surgical treatment of crouch gait on a patient-specific basis”

Groome, James: National Institutes of Health, NINDS

“Determinants of Sodium Channel Function: Ion Pair Interactions across Domains

Jorcyk, Cheryl: National Institutes of Health, NIGMS

“The Southwest Idaho Bridges to the Baccalaureate”

Martin, Bryn: National Institutes of Health, NIGMS

“Subaward: MRI-based Biomarkers for Amyotrophic Lateral Sclerosis”

Morrison, Brad: National Institutes of Health, NINDS

“Autophagy dysfunction in Parkinson’s Disease by VPS35 D620N”

Morrison, Brad: National Institutes of Health, NINDS

“Supplement to R15 “Autophagy dysfunction in Parkinson’s disease by VPS35 D620N”

Nagarajan, Rajesh: National Institutes of Health, NIGMS

“Acyl-homoserine lactone signal fidelity enforcing mechanism in bacterial communication”

Oxford, Julie: National Institutes of Health, NIGMS

“Supplement: COBRE in Matrix Biology”

Oxford, Julie: National Institutes of Health, NIGMS

“COBRE in Matrix Biology”

Peng, Ching-An: National Institutes of Health, NCI

“Engineering Viruses for Cancer Therapy”

Pilarski, Jason: National Institutes of Health, NINDS

“Mechanisms of respiratory-related rhythmic motor activity and plasticity in the avian brain stem”

Stenkamp, Deborah: National Institutes of Health, NEI

“Patterning Genes in Retinal Development”

Stenkamp, Deborah: National Institutes of Health, NEI

“Ocular Vasculature and Retinal Neurogenesis”

Stenkamp, Deborah: National Institutes of Health, NEI

“Synapses in Regenerated Retina”

Stevens, Dennis: National Institutes of Health, NIGMS

“Idaho Biomedical Research Collaborative in Emerging/Re-emerging Infectious Disease”

Warner, Lisa: National Institutes of Health, NHLBI

“Subaward: Using fortilin inhibitors to block atherosclerosis”

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